Silurus meridionalis (southern catfish): 124378044
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Entry
124378044 CDS
T08004
Symbol
grin2bb
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b isoform X1
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04020
Calcium signaling pathway
smeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
124378044 (grin2bb)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
124378044 (grin2bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124378044 (grin2bb)
Ion channels [BR:
smeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
124378044 (grin2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
124378044
NCBI-ProteinID:
XP_046693466
LinkDB
All DBs
Position
24:complement(9562948..9672579)
Genome browser
AA seq
1758 aa
AA seq
DB search
MAVGLAMFKGLRLHFTAMLVSLGLSPSFRRTLSSLSVSPSPSRLPLCSFVLILLLLLFPV
CESRRGGGGMPGGVATGNIIGPPHYSPPNPVASVPKLAQGLSIAVVLVGNSSEVALAEGL
EKEDFLHVPLAPKLDLVTMNETDPKSIITRICALMSRHWLQGVVFGDDSDHEAIAQILDF
ISAQTHIPILGIRGGSSMIMAAKDDNSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTT
YYPGYQDFVNRIRSTIDNSFVGWELEEVLLLDMSVDDGDSKIQNQLKKLQSPVILLYCTK
EEAATIFEVAHSVGLTGYGYTWIVPALVAGDADNVPNVFPTGLISVSYDEWDYGLEARVR
DAVAIIAMATSTMMLDRGPHTLLKSGCHGAPEKKGPKGGNPNEVLRYLMNVTFEGRNLSF
SEDGYQMHPKLVIILLDKERQWDRVGKWENGSLTMKYHVWPRFELYSDAEERDDDHLSIV
TLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKTQNQTGDSGIYIKRCCKGFCIDILKKIA
KSVKFTYDLYLVTNGKHGKKINGTWNGMVGEVVFKNAHMAVGSLTINEERSEVIDFSVPF
IETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCL
ADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTAN
LAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYKEMHSYMTSF
HQKNVDEALHSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIAIQKD
SGWKRPVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDVDNMAGVFYMLGAAM
ALSLITFIAEHLFYWQLRFCFMGVCSGKPGVTFSISRGIYSCIHGVQIEENKSGLNSPSA
TMNMNMNNTHSNILRLLRTAKNMTSVPGVNGSPLSALDYGHRESAVYDISEHRRSLAGHS
DCKPPPPYLPEDNMFSDYVSDVERTFGNMHLKDSNLYQDHYLHHHGGTGSGLALGMSGPL
PNRPRSLGSASSLEGGMYDCDSLGGGVAPIFTTQPRQSLTHRNREKFDLIAGHPTQSSFK
SGLPDLYGKFSFKGGASSSGFIAGHDRYCGGGGAGSGGDDGNIRSDVSDISTHTVTYGNL
EGNAKRRKQYRDSLKKRPASAKSRREQDEIELGFRRRTHHTIHHHHHHHPVTQGHRSATP
PVERKSLRGGNSSYVFRDKDNMRDFYIDQFRSKEGASQWEHLDLSDAPGMGGGGGLGGGG
CGGIVSSGGGGGACTSLVPVDDFLKGKSKKTECKGGVGGSPGQQGHACWEKNIGGVGGLA
GGDWECRNCHSGGNKPICMHGGGGGVGGSSGGGGGSGQASSRPSSATCKRCDSCKKPGNL
YDISEDNHLLLDQIGGKFPLEGGKGGGGGGGAQTQVQRRKFGPGGRVLRRQHSYDTFVDL
QKEGANRMGSSGGFGGASMLPQPRSVSLKEKDRYTEGASPYAQMFERYMGGERDTTFFSA
GDQGKGGGSSFNLFRGGEGGLHRRSVGERDMRDRDRGMMGGGMGGTRGVGTYSLSKSLYP
DKVNQNPFIPTFGDDQCLLHGAKSYYIKKQQAQPQQQQTQQQQQLLNNNNRADFRGSMGV
TSYLPASASAGVLSNVGPRFPKELCLGGPLSNHHGGAPGNNKLLSAREGLGMGQAQRPFN
GSSNGHVYEKLSSIESDV
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgggctggcaatgttcaagggactgcgtcttcacttcactgccatgcttgtc
agcctcggcctctctccctccttccgccgtaccctctcctcgctctccgtctccccttca
ccttccagacttcctctttgctcctttgtgctcatcctgttgctgctcctcttcccagtt
tgcgagtcacggcggggcggtgggggcatgcctgggggagtggccactggcaacatcatt
gggcctcctcactactctccaccaaatccggtggcatcagttcccaagttggcacagggc
cttagcattgctgtggtccttgtgggcaactcgagtgaggtggcactggctgagggctta
gagaaggaggacttcctgcacgtacccctggcacccaagctcgacctggtcacaatgaat
gagacagacccaaagagcattatcactcgcatatgtgcactcatgtctcgccactggctc
cagggcgttgtgtttggagatgactccgaccacgaggccattgcccagatccttgacttc
atctccgcacagacccacatccccatcctgggcattcgtggaggctcctccatgatcatg
gctgccaaggatgacaactccatgttcttccagtttggtccgtctattgagcagcaggcg
tccgtcatgctcaacattatggaggagtacgactggtacatcttttccatcgtcactacc
tactacccagggtaccaggactttgtcaacaggattcggagtaccatagataatagcttt
gtgggatgggaactggaggaggtgttgctgcttgatatgtcagtggacgatggcgactca
aaaattcagaaccagctgaagaagctccagagccctgttatcctgctctactgcactaaa
gaagaggccgccaccatttttgaggtggcacattcagttggcctcactggatacgggtac
acctggattgtaccagcgctggtagcgggagacgctgacaacgtgcccaatgtctttcct
acaggtctcatctcggtatcttatgatgagtgggattatggactggaggcgcgtgtgcgt
gatgctgtggcaatcattgccatggcaacctccaccatgatgctggaccgcggcccccac
acactgttgaagtcaggttgccacggtgcacctgaaaagaaaggccccaagggggggaat
cccaatgaagttctgagatacctcatgaatgtgacatttgaggggcgcaatctttccttc
agcgaggatggctaccagatgcacccaaagctggttattattttgctggataaggagaga
cagtgggacagggtgggtaagtgggagaatggctcactgaccatgaagtaccatgtgtgg
ccacgctttgagctatattcagacgcagaagaaagggatgacgaccacctgtctattgtc
acactggaggaggccccgtttgtcattgtggaggatgtggaccccctcagtggcacctgc
atgagaaacacggttccctgccggaaacagctcaaaacccaaaaccaaacaggagattca
gggatctatatcaagcgctgctgcaagggcttctgcatagacatcctcaaaaagatcgct
aaatctgtgaagttcacctacgacctctacctagtgaccaacgggaaacacggcaagaag
atcaatggcacatggaatggcatggtgggcgaggtggtgtttaagaacgctcacatggca
gtgggctctctgaccatcaacgaggagaggtcagaagtcattgacttctctgtccctttc
atagagacaggcattagtgttatggtctcacgtagcaatggcaccgtgtctccttctgcc
tttctagagcctttcagtgctgatgtgtgggtgatgatgtttgtgatgctgctgatcgta
tctgctgtggccgtctttgtctttgagtacttcagtccagttggctataaccgctgtctg
gcagatggacgagagccaggtggtccctcattcacaattggaaaggccatatggctgctc
tggggtctagtcttcaacaactctgtgcctgtacaaaaccccaaaggcaccaccagtaag
ataatggtatcagtgtgggccttctttgctgtcatcttcctggccagttacactgccaac
ctggctgccttcatgatccaagaggagtacgttgaccaggtgtctggcctcagcgataaa
aagttccaacggccgaatgacttttctccaccgttccgttttggcacggttcctaatggc
agcacggaaaggaacattaggaacaactacaaagagatgcacagctacatgaccagcttc
caccagaaaaatgtagacgaggccctgcacagtttaaaaacaggaaaattggatgcattt
atctatgacgccgcagtgctgaactacatggcgggcagagatgagggctgcaagcttgtg
acaatcggtagtggttatatcttcgctaccacaggctacggcatcgccatccagaaagat
tctggctggaaaagacctgtagaccttgctattctgcagttgtttggagatggtgagatg
gaggagctggaggcactgtggttgactgggatttgccacaacgagaagaacgaggtgatg
agcagccagctggacgttgacaacatggccggcgtcttctacatgttgggggcagccatg
gcactgtcactcatcaccttcatagctgagcacctgttctactggcagctacgcttttgc
ttcatgggcgtgtgttcgggcaagcctggtgtcaccttctccattagcaggggcatctat
agctgcatccatggtgttcagatcgaggagaacaaatcaggcctcaactctccgtctgcc
actatgaacatgaacatgaacaacacccactctaacatccttcgcttgctgcgcaccgcc
aaaaacatgacctctgtgcctggggtcaatggctcccccctcagtgccctggactatggc
caccgtgaatcagctgtctatgacattagtgagcatcgacgcagtctggcaggccacagt
gactgcaagcccccacctccatatctgccagaagataatatgttcagcgactatgtgagt
gatgtggagaggacttttggaaacatgcacctgaaggacagtaacctgtaccaggatcat
tacctgcaccaccatgggggcacgggatccggactggctctgggtatgtcgggtcccttg
cctaaccgacctcgtagcttaggcagtgccagctcattggagggagggatgtatgattgt
gacagtttagggggaggggtagcacctattttcactacccagccccgccaatcgctgacc
cacaggaacagggaaaagtttgacctgattgcaggtcatcccacccaatcgagcttcaag
tctggcctgcctgatctatatgggaagttttccttcaagggtggggcgtccagttcaggg
tttattgcgggacatgacaggtactgtgggggaggaggggcaggctcgggaggggacgac
ggaaacatccgttctgatgtttcagatatttccactcacacagtgacctatggaaatctc
gaaggcaatgctaagcgccgcaagcagtacagagacagcctgaaaaaaaggccagcatct
gccaagtcacgtcgggagcaggatgaaattgagctgggctttcggaggcgcacccaccat
accatccaccaccaccaccaccatcatcctgttacacaagggcaccgttcagcaacccca
cctgtggaacgcaagagcctgagagggggcaactcctcatatgtgttccgtgacaaagat
aacatgagggacttctacattgaccagtttcgatccaaagaaggggcatctcaatgggag
cacttggatttgagtgatgcccccggaatgggtggcggagggggtctgggtgggggcgga
tgtggcggcatagtcagcagtggtggtggcgggggagcgtgcactagtttggttcctgtg
gacgatttcttgaaaggtaaatccaagaagacagaatgtaagggtggagtgggaggatct
cctgggcagcagggccatgcatgctgggaaaagaacattggaggggtgggaggtttggcc
ggaggggattgggaatgccgtaactgccatagtggaggcaacaaacccatttgcatgcat
gggggaggagggggtgtagggggatcaagtggaggaggtgggggtagtggacaagcttcc
agccggccaagctcagccacttgcaagcgatgtgattcatgcaagaagccaggcaacttg
tatgacatcagtgaggacaaccaccttctcctggatcagatagggggcaagtttcccctg
gaaggtggaaagggaggtggtggaggtggaggggcccaaacccaggtgcagaggcgcaag
tttggcccagggggcagggtgttgcgtagacagcattcctatgacacattcgtagacctg
cagaaagaaggggcgaataggatgggaagctctggagggtttggaggagcatctatgctt
cctcaaccccgtagtgtgagtctgaaagaaaaagatcgctacacggaaggtgccagccca
tatgcccagatgtttgagaggtatatgggaggggagagggatactacattttttagtgcc
ggggaccaagggaagggaggtggatcctcgtttaacttgttccgtgggggtgagggtggg
ttgcaccgtcgctcagtaggcgaaagagacatgagggacagggatagaggcatgatggga
ggaggtatgggaggtacccgaggggttgggacttactccttgtctaaatctctctaccca
gataaggtgaaccagaacccattcatcccaaccttcggcgatgaccagtgcctattacat
ggcgccaaatcgtactacatcaaaaagcagcaggcacagccgcagcagcaacagacgcaa
cagcagcaacagctcctcaacaacaacaaccgggcagacttccgtggctccatgggggtg
acttcttatttgccagcctctgcctctgctggcgttttatccaacgtgggacctcgtttt
cccaaggagctgtgcctgggtgggccactaagcaaccaccatggaggggcaccaggcaac
aacaagctgctgtcagcaagggaagggttaggaatggggcaagcacagagacctttcaat
ggctcaagtaatggacatgtatacgagaagctctccagcattgaatctgatgtctga
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integrated database retrieval system
