Silurus meridionalis (southern catfish): 124386324
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Entry
124386324 CDS
T08004
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124386324 (pcdh10b)
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124386324 (pcdh10b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
CDC13_N
Motif
Other DBs
NCBI-GeneID:
124386324
NCBI-ProteinID:
XP_046706039
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All DBs
Position
5:2017834..2042277
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AA seq
1052 aa
AA seq
DB search
MEMLLLWLALCLAHRVASQIRYSVPEETERGTFVGNIAEDLGLDLTKLASRRFQTAPGSR
GSPYLDVNVESGALLVRERIDRERVCKQSASCVLHLEVFLEDPLELFRVEVEVNDVNDNA
PSFPESDVTVEISESATPGTRFPLEAAFDPDVGSNGLRTYEITANGHFALDVQTQTDGNK
FAELVLEKPLDREQQAVHRYVLTAVDGGQPARTGTALLVVRVLDSNDNVPTFDRAVYSAS
LAENAPAGTLVIQLNATDSDEGSNGEVVYSFGSHVSSRARELFDVDARTGRIEVRGEVDF
EESNLYQLYVQAKDMGPNAVPAHCKVLVKVTDVNDNAPEIAFSTVTESVSESAAPGTVIA
LLSVTDKDSGDNGRTRVEILGDVPFRLKSEFGNYYTVVTDGPLDREIADAYTVTVTARDG
GSPPLSSSKSVEVRVSDENDNAPAFSQPIYDVHVTENNVPGAYIYAVSARDPDAGDNSRV
TYTVLDRDIQGMSVLTYVSVNPENGYLYALRSFDYEQLKEFSFTVEARDAGSPELHSNAT
VHVVVVDQNDNAPAVIAPLGKNGTAREPLPRSAEPGYLVTRIVATDADDGENARLSYSIQ
RGNEDGLFRMDWRTGELRTARRVSAAKRDAQQHQQRRLYELLVEVRDHGQPPLSCSAVVQ
VALVDGLPAAASAEGRGGGGGGDRERGGAARAKDASLDLTLILIVALGSVSFVFLLAMIA
LAVRCRKDKKLNVYAGCNASCCLCCGRQARSSRGVSSGNGGSKKKQKKQKKLSKSDIMLV
QSANSADVSAHAGVGCGVGSAQVPVEESGSFGSLRRGQNYCYQVCLTPESANTDLLFLKA
CGAGASRAATDTEHSPRGGIHTTYTEQQQPDIISNGSLLSSETKHQRAELSYLVDRPRRV
NSSAFQEADIVSSKDSGHGDSEQGDSDHDATHRGHSSGADLFSNCTEECKALGHSDRCWM
PSFVPTESRQGADYRSNLHVPGMDAVPDSEVFEGDAFTGDQSFSTFGKEPLHTYQHQQHL
QASTLDTRELHALLSNSRTPYKANYLSRKRIC
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggagatgctcctgctttggctcgcgctgtgtctggcgcacagggtcgcctcgcagatc
cgttactcggtaccggaggagacggaacgaggaacattcgtgggtaatatcgccgaggac
ctgggtctggacctgaccaaactcgcttcccgtcgtttccagacggcgccgggctcacgc
gggagcccgtacctggacgtgaacgtagagagcggcgcgctgctggtgcgagagcgcatc
gaccgcgagcgcgtgtgcaagcagagcgcgtcgtgcgtgctgcacctcgaagtcttcctg
gaggatccgctcgagcttttccgagtcgaggtcgaggtgaacgacgtgaacgacaacgcg
cccagcttcccggagagcgatgtcacggtggagatcagcgagagcgccacgcccggcacg
cgtttcccgctggaagcagccttcgacccggacgtgggaagcaacgggctcaggacgtac
gagatcaccgcaaacggtcactttgcgctcgacgtgcagacgcaaacggacgggaacaag
ttcgcagagctggtgctggagaagcccctggacagagagcagcaggcggtgcaccgctac
gtgctcacggcggtggatggcgggcaaccggcgcgcacgggcacggcgctcttggtggtg
cgcgttctcgactcaaacgacaacgtgccaacgtttgaccgggccgtgtactcagcgagc
ctggctgagaatgcgcccgcgggcactctggtgatccagctcaacgcgaccgactcggac
gagggctctaacggagaggtggtctactcttttggcagtcacgtgtcgagccgcgcgcgc
gagctgttcgacgtggacgcgcgcacgggccgcatcgaagtgcgcggcgaggttgacttc
gaggaaagcaacctctatcagctctatgtgcaggccaaggacatggggccaaacgctgtg
cccgcacactgtaaagtcctcgtgaaagtcacggatgtcaacgataacgcgccggagatc
gccttcagcaccgtgacagagtccgtgagcgagagcgcggccccgggcacagtgattgcg
ctgctgagcgtcaccgacaaggactctggagacaacgggcgaacgcgcgtcgagatcctc
ggtgacgtgccgttcaggctcaagtctgagtttggaaactattacacggtggtcacggat
ggcccgctggaccgcgagattgccgatgcgtacacggttacggtgacggctcgcgacggg
ggctcgcctccgctctcctcgagcaagtcggtggaggtgcgcgtctcggacgagaacgac
aacgcacccgcgttctcgcagcccatttacgacgtgcacgtcacggagaacaacgtgcct
ggcgcctacatctacgccgtgagcgcgcgggatccagacgccggcgataactccagggtg
acctacacggtcttggaccgcgacattcagggcatgtcggtcctcacatacgtgtccgtg
aacccggaaaacggctacctgtacgctctgcgctctttcgactacgagcagctcaaggag
ttcagcttcacggtggaggcgcgggacgcaggaagccccgagctgcactcaaacgccacc
gttcacgtagtcgtagtagatcagaatgacaatgcgccggccgtaatcgcgcctctgggc
aaaaacgggacagccagagagcctctgcctcgttcagccgaaccgggctacctggtcaca
cgtatagtcgccacagacgcagacgacggtgagaacgcgcgtctttcctacagcatccag
cgcggaaacgaggacggattgtttcgcatggattggcgcacgggggaattgcgcacggct
cgcagagtgtctgcggctaaacgggacgcgcagcagcaccagcagaggcgcctgtacgag
ctactagtggaggtgagagatcacggccagccgccgctctcgtgcagcgccgtggttcag
gtcgcactggtggacgggcttccagcggcggcctcggcggagggacgcggaggagggggc
ggcggcgatcgcgagcgtggtggagctgcccgtgccaaagacgcgagcctggacctcaca
ctcatcctgatcgtcgctctcggctcggtttcgtttgtctttttgctcgccatgatagcc
ctcgccgtgcgctgccgcaaagacaagaaattgaacgtgtacgcgggatgcaacgcgtcc
tgctgcctctgctgtgggcgacaggcgcgctcctcccgcggcgttagcagcggcaacggt
ggcagcaagaagaagcagaagaagcagaaaaaacttagcaagtcggacatcatgctggtg
cagagtgccaactcggcagacgtgagcgcgcacgctggagttggctgcggagtcgggagc
gcgcaggtgcccgtcgaggagtccgggagctttggctctctgcggcgcggccaaaattac
tgctatcaggtctgcctcacccctgagtccgccaacaccgacctgctcttcctgaaagca
tgcggagcgggagcgagccgcgcggccacggacaccgagcacagcccacgaggaggaata
cacaccacatacacggagcaacagcagccggacatcatctctaacgggagccttttatcc
agcgagacgaaacaccagcgggccgagctcagttacctggtggacagaccgaggcgtgtg
aacagttcggcattccaggaagcggacatcgtgagctcgaaggacagtggacacggagac
agtgagcagggagacagcgatcatgacgccacgcatcgtgggcactcctccggagcagat
ttattttcgaactgcacggaggagtgtaaggcgctgggccactcggaccgctgctggatg
cccagcttcgtgcccaccgagtctcggcagggcgccgactaccgcagcaacctgcacgtg
cctggcatggacgccgtgcccgactctgaggtatttgagggtgacgcgttcacgggcgat
cagtcattctccacgttcggcaaagagccgctccacacataccaacaccaacagcacctt
caagcctccacgctagacaccagagagctccatgcgctcctgtctaactcgcgcacgcct
tacaaagccaactatctgtcgcggaaaaggatttgttag
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