Silurus meridionalis (southern catfish): 124387088
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Entry
124387088 CDS
T08004
Symbol
pcdh7b
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-7b
KO
K16498
protocadherin delta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124387088 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124387088 (pcdh7b)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124387088 (pcdh7b)
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124387088 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
LYRIC
MLANA
Motif
Other DBs
NCBI-GeneID:
124387088
NCBI-ProteinID:
XP_046707143
LinkDB
All DBs
Position
6:17502426..17631115
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AA seq
1253 aa
AA seq
DB search
MRNTVTTDCWCYCFLLLQLLTQPAAKQVLRYRLAEEGPADVRVGNVAADLGIVAGSGDVT
FTLESGSEYFKIDNITGDLSTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGESSVRRIGSGGSANVDSHMGKRRFEDGASRSSVFELQVADTTDGEKQPQLIIKGALDR
EQRDSYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPIL
QLKAMDADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMAR
DRGQPPKTDKATMIINIKDENDNVPNIDIRKIGRIFLRDGVANVAEDVVIDTPIALVQVS
DRDKGPNGVVTCTVVGDVPFQLKPASEIEGDMNKKKYFLHTSAPLDYEAVQEYNVVIVAV
DSGSPSLSANNSLIVKVGDMNDNPPIFSKNTMEVSFPENNAPGERVLTVVALDADSGKNA
EIAYSLDSSVNGIFSIDPDSGDIRVNTILDREQTERYEFKVIAKDKGVPVLQGSATVVVL
VADKNDNEPKFMQDVFTFYVKENMQPNSPVGMVTVMDADKGHNAEMSLYIEEEEDIFSIE
NNTGTIYSTVAFDREQKTTYSFRVKAIDGGDPPRSATATVSLFIMDENDNPPTVTFPLNS
SYTLLPPSSNLKTVVRTVIATDTDTGVNADLSYSIVGGNPFKLFEIDSVTGVITLVSKLE
QKHYGLHRLVVQVNDSGVPSQSTTTLVHVYVNETISNSTIIDSKIAKSLGTPLNADIAGD
PNYDLGKQRLSIAIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQH
DKNKKPKKDKNKRKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPG
SPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISIGSDHCSDYS
SQTLNKYNKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLDESETPSSKSSTGPGWEPFPS
LRMPMRGPRRMAVSVRQSIWKMEKKNNKNSRPLPDVAMTGKCTRECDEYGHSDACWMPVR
TSPERRSKATPPKLSTFNSSSAGCSGAEPATSSDPLAVANGEPSHLLGDRNRNLLNKKMA
SSSSSSSAYDAFGSAAFSASDETSRPVEEIPLAPTGEYKPTQCGTLTRREVYL
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatacagtcactacggactgctggtgctactgttttctgctgctgcagctgctg
actcagcccgcggccaagcaagtgctgcgctaccgcttggctgaagaaggtcctgccgat
gtgcgcgtcgggaacgtggccgccgacctcggcattgtcgccggctccggggatgtgact
ttcactctcgaatctggctcggagtactttaagatcgacaacatcaccggcgatttgagc
accaacgagcggcgcattgaccgcgagaagctgcagcagtgccagatgatcttcgacgag
aacgagtgcttcattgacttcgaggtgtccgtgatcggacccgcgcagagctgggtagac
ctgttcgagggcaaggtcatcattctggacataaacgacaacacgccgtctttcccctcg
cccgtactcacgctctcagtagaggaaaaccggccgatcggcacgctttatcttttgcca
acggccaccgaccgggatttcggcaggaatgggatcgagagatacgagttgattcaggac
aacggagaaagctcggtgcgccggataggctcagggggctccgctaatgtcgactctcac
atgggaaagagacgatttgaggacggcgcgagtcggagcagcgtgtttgaacttcaggtc
gctgacacgacagacggagagaaacagccgcaactgatcattaaaggcgcactggacaga
gagcagcgcgactcgtatgagctgactctgcgcgtcagagacggcggagacccccctcgc
tcctctcaagccattctcagagtgatgataacagatgtgaatgacaacagccctcgcttt
gagaagagcgtgtatgaggcagatctacctgagaacagctcccctggcgcccccatcctc
cagctgaaggcaatggatgctgatgttggggttaatggccagattgaatatgttttcggg
gcagccactgagtcagtgcgacgactcctgcggttagacgagagcacaggctggcttagt
gtgttgcacaggattgatcgcgaggaagtcagtcagctgcggttcacggtcatggcccgt
gatcgtggtcagcctcccaagacagacaaggctactatgattatcaatatcaaagatgaa
aatgacaacgtcccaaatatcgacataagaaaaatcggccgcatttttctcagagatggt
gtggcaaatgttgcagaggatgtagtgatagacacacctattgcattagtgcaagtgtct
gatcgtgacaaggggccgaatggtgttgtgacatgcaccgtggtcggtgacgtacccttc
caactgaagcctgcgagcgagattgaaggtgacatgaacaaaaagaagtatttcctgcac
acatcagcaccgctcgactatgaagctgtgcaggagtacaacgttgtcatagtggctgta
gattcaggcagccccagtctgtctgcaaacaactcattaatcgtgaaagttggggacatg
aatgacaatccacctatctttagcaaaaacacaatggaagtctcatttccagagaacaat
gctcctggtgaacgtgtacttactgtagtggccttggatgcagacagtggcaaaaatgca
gaaatcgcctactcactggattcatctgtgaatggaattttttccattgacccagatagt
ggtgacattcgtgttaacacgatacttgatagagagcaaacagagcgctatgagttcaaa
gtaatcgccaaagacaaaggtgtgcctgttttacagggctcggccacagtggtggtactg
gtggcggacaaaaacgataacgaaccaaagtttatgcaggatgtttttactttctatgta
aaagagaacatgcaacccaatagccctgtaggcatggtaacagtaatggatgcagacaag
ggtcataatgctgaaatgagcctttacattgaggaagaggaagacattttctcaattgag
aacaacacaggaaccatctattctactgtagcatttgaccgtgaacagaaaaccacctac
tcattccgtgtgaaggcaatcgatggtggggatccacctcgatcggccacagccaccgtc
tcactttttatcatggatgaaaatgataacccaccaacggttacttttcctcttaacagc
tcctatactctgttacctccatccagcaatttgaaaacagtcgtccggacagtgatagca
accgacactgacacaggtgtcaacgctgacctcagctacagcatagtaggtggcaacccc
tttaaattattcgagattgactctgtcactggtgtaattacattagttagcaagctagaa
cagaaacactatggccttcaccgcctggtcgtgcaagttaacgacagtggggtaccctca
cagagcaccaccacattagtgcatgtctatgtcaatgaaacaatctccaactccaccata
atagattccaaaatagccaaaagccttggtacaccccttaatgccgacattgccggagat
ccaaactatgacctgggcaagcagcgtttaagcattgctataggagtagtgtctggcatt
atgacagttatcctcatcatcctcattgtggtcatggcccgttactgcaggcccaagaac
aagaacgggtatgaggctggcaagaaagaccacgaagacttcttcaccccacagcagcat
gacaagaacaagaaacccaaaaaagacaagaacaaaaggaagtctaagcaacctctgtac
agcagtattgtcaccgtcgaagcttcaaagcctaatggacagcgatatgatggcgtcaat
gagaaactctctgacagccctggaatgggtcgttatcgctctgttaacggagggcccgga
agcccagaccttgctcgccactacaagtccagctcacctctacctactgttcagcttcat
ccacagtcacccactgcagggaaaaaacaccaggctgttcaggatctgccaccggccaac
acctttgtgggcaccggagataacatatccattggatctgaccactgctctgactacagc
agccaaacccttaacaagtacaacaagcagccattccgccgagtgacgttctcggtggtg
agccagccccaggacccccaccagggctctctgcagagctgctacgacagtggccttgac
gagtcggagacgccgagcagcaagagctccacaggccccggctgggagcccttcccctcc
ctgaggatgcctatgagaggaccacgccggatggcagtgtcggtgaggcagagcatatgg
aaaatggagaaaaagaacaataaaaactctcggcccctgccggatgtagccatgacgggg
aagtgtacgcgcgagtgtgacgagtatggccactcagacgcctgctggatgccggtgcgc
acttcacccgagcgcaggtccaaggccacccctcccaaactctccaccttcaactcgagc
tcagccgggtgcagcggtgccgaaccagccacgagctctgatccactcgccgtggccaac
ggagagccctcacacctccttggagaccgcaaccgcaatctcctcaacaagaaaatggcc
tcctcctcttcctcctcctcggcctacgatgctttcggttcggctgccttctctgctagc
gatgaaacgtctcggccggttgaagagattccgctggcacccacaggcgaatataaacct
acgcaatgcgggacgcttactaggcgcgaggtttacctgtga
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