Silurus meridionalis (southern catfish): 124391086
Help
Entry
124391086 CDS
T08004
Symbol
ncanb
Name
(RefSeq) neurocan core protein isoform X1
KO
K06794
neurocan core protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124391086 (ncanb)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124391086 (ncanb)
04091 Lectins [BR:
smeo04091
]
124391086 (ncanb)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124391086 (ncanb)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124391086 (ncanb)
Lectins [BR:
smeo04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
124391086 (ncanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
hEGF
EGF_2
Ig_3
DUF1554
I-set
Motif
Other DBs
NCBI-GeneID:
124391086
NCBI-ProteinID:
XP_046713375
LinkDB
All DBs
Position
9:complement(374660..515440)
Genome browser
AA seq
1267 aa
AA seq
DB search
MLMECRMSGLQSLLTMFLLLSLEHDMALTESVVNMRKVTHQVEQVPLSGTAVLPCIFTLQ
PSPSHEPHDAPRIKWTKIWGHRGLDGLQREQSVLVAKGNVVKVKKAFQGRVTLPGYSENH
YNASLALTGLRSSDSGMYRCEVVVGLNDEQDTVPLQVTGVVFHYRAPHDRYALSYPDAKH
ACEENSAVIATPGQLQATFDDGYDNCDAGWLSDQTVRYPIQSPRPGCFGDREDLPGVRNY
GSRATDELFDVYCFAENLEGEVFHASVPDKLSLATASTHCHTLGAQLATVGQLYLAWQSG
LDRCDPGWLADGSVRYPINQPRRNCGGDEPGVRTLYLNPNRTGFPHTASLFDTYCYREKH
LEPKALLQISETSQTSNSTDDWELQQNEAFPQPSTWTGLVDLDKEEFNSIADNESSEISE
EHVVIHLRARESPVIQEAHASKDHSPLILELYGGSAKEDPDEREASEDHRLSMEPSLTTP
STSTQVPTSNSMLFNFVDSFMRPWKYRKGSASTGAPSTVSSLLKETSEEVQDVRVRPDGG
LKGNKGSIDNAIVEPESIELSSEPSTVYSEEGLLEQEKEVVLPVPVKESKNPSEIQTEPS
VSQATEPRGLIASGRMEVMNPTAATSPMGSRSSSGSMPVLGSEQKWEFESLRGYSTPNSN
VIFTTQTSGLVENKREAMEIMTIPFSRDTHENYSGEGKDHIDEIYSLPKVSASQSSLQRG
LSEELSDTDGSGGNDLFISSTHMKQGTLETTEEQNVLLQTTVQWELLDLPTGQPSQSTGV
SKDALGPEEARGEILYIHRPTEKSETFPFKVHLVQKNLNTHAPNGSEIPTPYVATNSELN
QTASSATEQMPTFYSEIHTTDATTAEDPTTDPADPATSVTQLPVVQEETEEPQTDTFTTE
TSLRLETTSNTVQLTTPSVMETSHQSETEPETQTAPPTDITVGFNTSTATAEYEHDSSAS
SAEEEPCQTNPCLHGGSCLKEGEGYSCLCPLGYYGESCEIDIDECQSNPCQNGGTCIDEI
NSVVCLCLPSYGGAMCEKDTEGCDHSWRKFHGHCYRYFIHRLNWEDAEKDCRAHNGHLAS
IHTREEQDFINSMSHENTWIGLNDRTVEEDFHWTDNMDLQYENWRENQPDNFFAGGEDCV
VMIAHENGKWNDVPCNYKLPYICKKGTVLCGPPPPVDNAFLIGRKRSHYDIHSVVRYQCA
DGFLQRHVPTTKCRASGKWDHPKILCTKSRRSHRYRRHHHKSHHERRKHKKHGSAAHRGR
AQGHGHF
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgttgatggagtgccgtatgtcaggacttcagtctcttctgacgatgtttcttctcctc
tctctggaacatgatatggcattgactgaaagtgtggtgaacatgcggaaggtgactcac
caggtagaacaggttccactgtcaggaactgctgtgctgccctgcatcttcaccctgcag
cccagtccatcacatgaacctcatgatgctcctcgcattaagtggaccaaaatctggggc
catcgtgggcttgacgggttacagagggagcaatctgtattagtggcaaaaggcaacgtg
gtgaaggtgaagaaagcattccagggtcgtgtcacacttcctggctactctgagaaccac
tacaatgccagcctggcgctgacaggtctgagatccagcgactcgggcatgtaccgctgt
gaggtagtggtgggtcttaatgacgaacaagacactgtgccccttcaggtcacaggtgtg
gtctttcactacagagcccctcatgaccgatatgccttgtcataccctgatgctaagcat
gcatgtgaggaaaactctgcagtgatcgcaacacctggccagctgcaggctacttttgat
gatggatatgataactgtgacgcaggttggctctctgaccagactgtaaggtatcctatc
cagtctccacgtcctggctgctttggcgaccgagaagatttgcccggtgtgagaaactac
ggcagtcgcgccactgatgagctgttcgacgtgtactgctttgctgagaacctcgaaggt
gaggtgttccatgccagtgttccagataagttgagtctggctacagcttccactcactgt
cacacactgggtgctcagctggccacagtggggcagctttacctggcctggcagtctgga
ctggaccgctgtgacccgggctggctggctgacggtagcgtacgataccccatcaatcag
ccacggcgtaactgcggaggcgatgagccgggagtacgcacgctttacctcaaccccaac
cgcaccgggtttccccacaccgccagcctcttcgatacctactgctacagagagaaacat
ctagaaccaaaggcacttctgcagatttcagagacttcacagacctcaaactccacagat
gattgggaactccagcagaatgaagcctttcctcaaccttccacctggactggactggta
gacctggataaggaagagtttaactccatcgcagacaacgagtcctctgagatatcagaa
gagcatgtggtgatccatctcagggctagagagagtcctgtgatccaggaagcacatgcg
tctaaagatcattctcctctcattctggagctatatgggggttcagcaaaagaggatccc
gatgaaagggaagcatctgaggaccacagattgtccatggaaccctcattgaccacacca
tccacatctacacaggttccaaccagcaatagcatgctcttcaactttgttgactccttc
atgaggccatggaaataccggaaaggcagtgcttcaactggagctccttcaacagtgtca
agtctattaaaggagacatcagaggaggtccaggacgtcagggtgagaccagacggtggg
cttaaagggaataaaggaagtattgataatgctattgtggagcctgagagtatagagctg
tcatctgaaccctccacggtgtactcagaggaaggtcttctagagcaggagaaagaagtg
gttctgccagtaccagtcaaagagtcgaagaatcccagcgagatccaaacagaaccttcg
gtttcacaagcaacagaacccagaggactaattgcgtcaggacggatggaggtgatgaat
cccacagctgcaacgagtcccatgggttccaggagcagttctggctccatgccagtgctg
ggcagtgagcagaaatgggagtttgagtctctgagaggatactccaccccaaacagtaac
gtgatcttcacaactcagaccagcggacttgtggagaacaaacgagaggcgatggagatc
atgacaattccgttcagcagggacactcatgagaactactctggtgaaggaaaggatcat
atcgatgagatttactcactgccaaaagtgtcagcatcacagtcctccttacaaagaggg
ctttcagaagagttgagcgacactgacgggagtggaggaaatgatttatttatcagtagc
actcacatgaagcagggaactctggaaaccactgaggaacagaatgttctcttacaaaca
actgtgcaatgggagcttctagatcttccaactggacaaccctcccaaagcacaggtgtc
tccaaagatgccttaggtcctgaggaggccagaggggaaatcctgtacattcatcgtcct
acagaaaaatctgagacctttccatttaaagtgcatttggtccagaagaatctgaacaca
catgcacctaatggatctgaaatcccgactccttacgtggccaccaattcagaacttaac
caaacagcatcaagtgctactgaacaaatgccaacattttacagtgagattcacacgaca
gatgccaccactgctgaagatccgactacagatcctgcagatcctgcaacatcagtgact
cagttgcctgtggttcaggaagaaaccgaggaaccacagacagatacgtttactactgag
accagtttaagacttgagactacaagtaacacagttcaactcaccacaccaagtgtgatg
gaaacatctcatcagagcgagactgaaccagaaacccaaacagctcctcccacggacatc
acggtgggatttaacacgagcacggctacagctgagtacgaacacgactcttcagcttca
tccgcagaagaggagccttgccagacgaacccgtgtctgcatgggggaagctgtctgaaa
gaaggggaagggtacagctgcctctgccctctggggtactatggggagagctgcgagatc
gatattgacgaatgccagtcgaatccgtgtcagaatggaggcacctgcattgacgagatc
aactctgtggtgtgcctgtgtttgcccagttacggaggagccatgtgtgaaaaagacact
gagggttgtgatcatagctggagaaagttccatggtcattgttacagatacttcattcac
agactgaactgggaagatgcggagaaagattgcagagcgcacaatggccacctggctagc
attcacaccagagaagagcaggactttatcaacagtatgagtcacgagaacacttggatc
ggtctgaatgacagaacagtggaggaggatttccattggactgataacatggatctgcaa
tatgagaactggagggagaaccagcctgataatttcttcgcgggaggagaagactgcgta
gtgatgatcgcccatgagaatggcaaatggaacgacgtgccctgcaactacaagctgccc
tacatctgcaagaaaggcacagtgctctgtggtcctcctcctccagtggacaacgccttc
ctgattggacgaaagcgttcacactatgatatccactcggttgtgcgttatcagtgtgct
gacggttttctccagcgccacgttcccaccaccaagtgtcgcgccagtgggaaatgggac
catcccaaaatcctgtgtaccaagtctcggagatctcatcgctatcggcgccatcatcac
aaatctcatcatgagcgcagaaagcacaaaaagcacggctcggccgctcaccggggcaga
gcgcagggtcacggccatttctaa
DBGET
integrated database retrieval system
