Silurus meridionalis (southern catfish): 124403318
Help
Entry
124403318 CDS
T08004
Symbol
ncana
Name
(RefSeq) neurocan core protein isoform X1
KO
K06794
neurocan core protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124403318 (ncana)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124403318 (ncana)
04091 Lectins [BR:
smeo04091
]
124403318 (ncana)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124403318 (ncana)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124403318 (ncana)
Lectins [BR:
smeo04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
124403318 (ncana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
hEGF
EGF_2
Chordopox_A33R
EGF_CA
C2-set
FXa_inhibition
Motif
Other DBs
NCBI-GeneID:
124403318
NCBI-ProteinID:
XP_046732953
LinkDB
All DBs
Position
20:complement(4608462..4697015)
Genome browser
AA seq
1057 aa
AA seq
DB search
MGCVCGPGGLQALLMLLCLLTGCDLSNAETLVTVHKVTHPTIREPLAGSALLPCVHTLPL
SSDHRGQTPHVQWTRLEDGKETTVLLLEDGEVRVQRAYLGRLSLPGYHSNSLNVSLALSQ
LRNNDSGTFLCHVILGDTYEQDTITLEVTGVVFHYRTPAQPYSLSFADAERACEQNSAQI
ASADQLWAAFHSGLDECSAGWLRDQTVRYPIQKPELGCYGHSENVRGVRNYGKRDASDLF
DVYCFAGAMQGEVFPLLAPGNLTLAEAVAQCAVLGAQLATVGQLHLAWRSGLEHCEPGWL
ADGSVRSSVIKPRLECRSGEPGVHIDSSTELGNLTALFSAYCYRESQDSSTEPPVPQPSN
WTGQVDLDAEPIIISISESDDYITTRLCVEDGSLDCSQEDSTTITWQDISTTLSDITPER
LREENKGHEVTTVALPTPTMTQKTDSFRNIMSSWWKPWNYLTGNNEEESDTTSNPLTTVP
GAIGSTVPEVHTSTQSDDSSASGQISWWSHTWFNQFSTTEDKTTASPQLENTGTSSATPV
ETTREVLEQSMTTATGEWAVVTEVFQLGSLTTETEKETVPSVVSLKKEEEEEEIEDKEKV
IGLPEEEFREHRRTEEEGSSWGDVDLSESTTKALTTGQVLTSTSPNIRVTVATMTPQVEE
LTAAEARGEIQYEPMTTVRQPEQKNTTMLVSTTWAASEKEEEAQTTLIPDLSTSSSQSMT
ESGVISPTASDEYHLSIFGSLLPGNPESGLGNSDSSRNNESEAQDRCSCLHGGTCLPHDE
GFQCFCPQGYTGESCEIDVDDCLSNPCENGGTCIDKVDSFICLCLPSYSGDMCEKDTEGC
DHGWKKFHGHCYKLFTRRHTWEDAEKDCRELSGHLTSVTSSVEQDFLTGLGHDNVWIGLN
DRTVEEDFQWTDNMDLVYENWRENQPDNFFAGGEDCVVMISREDGKWNDVPCNYNLPYIC
KKGTVMCGTPPAVRNTYLVGRRRAHYDIHSVVRYQCVDGFFQRHVPTVRCRPNGTWERPK
IVCTKSRRSHRYRRQHHRYHHEHRRHRRHGSGHRGRD
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgggatgtgtgtgtggtcccggtgggctgcaggctctgctcatgctcctctgtctcttg
actggatgtgacctgagtaatgctgaaactctggttaccgtgcacaaagtaacgcacccc
accatccgagaacctcttgcaggctctgccctccttccctgcgtccacaccctgccactc
agctccgaccaccgtggtcagactccgcatgtgcaatggactcgtctcgaggatggcaaa
gagaccactgtgctcttactcgaggatggagaagtccgtgtacagcgggcatacctagga
cgcctcagtctgccggggtaccactcgaacagcctgaacgtctcgctggctctctcgcag
ctccgcaataacgactctgggacctttctctgtcatgtgatcctcggagacacttacgag
caagacaccatcacgctggaggttacaggggttgtgtttcattaccgtacgccggctcag
ccttactctctgtcgttcgcggatgctgagcgtgcgtgcgagcagaactcggctcagata
gcatctgctgaccaactctgggctgctttccactcgggcctggacgagtgttcggccggc
tggctcagagatcagactgtaaggtacccgattcagaaaccagagctgggctgctacgga
cacagcgaaaacgtgagaggggtgaggaattatgggaagcgagacgcctccgatctgttt
gacgtgtactgcttcgccggcgccatgcaaggtgaagtgttcccgctcttggctccaggg
aatctcaccctggccgaggctgtggctcagtgcgctgttctgggcgctcagctggccaca
gtgggtcaactccatctggcatggcgctctggcctggagcactgcgaacccgggtggctt
gcagatggcagtgtgaggtcctcagtgattaaaccgcgtcttgagtgtaggagcggagaa
cccggggtgcacattgactcatccacagagctcggcaatttgacggccttgttcagtgca
tactgctacagagaatcacaggattcctctactgagccacctgttccccagccatcaaac
tggactggccaagtagacctggatgccgagcccattataatcagtatatctgagtctgat
gattatattacgacacgtctatgtgtagaggatggctccctggattgcagccaagaagat
tcaacaacaattacctggcaggacatatctaccacgctatcggacatcacccctgagagg
ctcagagaggaaaataaaggccatgaggttacaacagtagccttgccaacaccgactatg
actcagaagacggactcctttagaaacataatgagctcctggtggaaaccctggaactac
ctgacgggaaacaatgaggaggagagcgacaccacttcaaatcctcttaccacagtgcct
ggtgcgataggttctacggtccctgaagtgcatacaagcacacagtctgacgattcttca
gcatcaggacagatatcatggtggtcgcatacctggttcaaccaattttctacaacagaa
gacaaaacgaccgcttcccctcagcttgagaacacaggcacctcatcggcaaccccggtt
gagaccaccagagaagtcctggagcaaagcatgaccacagctacaggagagtgggcagtc
gtgactgaggttttccaacttggaagcttgacaactgaaacagagaaagaaactgtgcca
tctgtagtttcactcaaaaaagaagaagaagaagaagaaatagaagataaggagaaagtg
attgggcttccagaagaggagtttagagagcacaggaggacagaagaggagggtagctcc
tggggggatgtggacctgtctgaaagtaccaccaaagccctaacaacagggcaagtttta
actagtacatcgcctaacatcagagttactgtagctacaatgacaccacaagttgaagag
ttaacagctgctgaggctcgaggagagatccagtatgaacccatgaccacagtaaggcaa
cctgagcaaaaaaacaccaccatgcttgtctccacgacttgggctgcttctgaaaaggag
gaagaagctcagaccaccttgattcctgatctttcaacttcgtcttctcaaagcatgaca
gaaagtggagtcatctctcccacagcttcagatgagtaccatctgtcaatctttggctcc
ctgttgcctggcaacccagagagcggccttggcaactccgattccagcaggaacaatgaa
tctgaagctcaggacagatgcagttgcttgcatggagggacatgcctcccccacgatgag
ggcttccagtgtttctgcccacagggatacacaggagagagctgtgagatcgatgtagat
gactgtctgtccaacccatgtgagaacggagggacctgcatcgacaaggtggactccttc
atatgcctgtgtttacccagctacagtggagacatgtgtgagaaagacactgaaggctgt
gaccacggctggaagaagttccacggtcactgctacaaactgttcacccgccggcacacc
tgggaggatgctgagaaggactgcagagagcttagcggccacctgaccagcgtcacctcc
agcgtggagcaggacttccttactggcctgggccatgataatgtgtggattgggctaaat
gacagaacagtggaggaagatttccagtggactgacaacatggacctggtatacgagaac
tggcgtgagaaccagccggataatttctttgcaggtggagaagattgtgtcgtgatgatc
tctcgagaggacggcaagtggaacgatgtgccttgtaactacaacctgccctacatctgc
aagaagggcacagtcatgtgtggcactcctccggctgtgaggaacacgtatcttgtggga
cggaggcgagctcactatgacatccactcggtggtgcgttaccagtgtgtcgacgggttc
ttccagagacacgtcccgacggtgcgctgccgacccaacggcacctgggagagacccaag
atcgtctgcaccaagtcacggaggtctcaccgctaccgtcggcaacatcacagatatcac
cacgagcaccggcgacaccgcagacatggttccggccacagaggacgggactag
DBGET
integrated database retrieval system
