Sinorhizobium meliloti RMO17: DU99_19535
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Entry
DU99_19535 CDS
T03395
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smer
Sinorhizobium meliloti RMO17
Pathway
smer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DU99_19535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smer03400
]
DU99_19535
Enzymes [BR:
smer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DU99_19535
DNA repair and recombination proteins [BR:
smer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DU99_19535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIM01496
LinkDB
All DBs
Position
pSymA:complement(308028..309056)
Genome browser
AA seq
342 aa
AA seq
DB search
MSRRAKPLLQDDSVAKSIPARPRDPAQPNLPFDPMPERIEPCLALLKPVPPKGPDWVFDG
YRLAIHIEPKGVRIITRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLDEEGRSDFGA
LQRSLGGRGGKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGPTGAIQSSEE
VFGDGALLEKACSMGLEGIIAKHRDRPYRSGRTGDWLKIKCLQSESFMIVGYEQSLTARG
GLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEYLRKTLDRLKTSKPAVPLKGKNLVFAQPT
LIAEIEFRGWTHDGSLSHASYKGLREVQDNAAVFDMSERATL
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcgtgccaaacctttgctgcaggacgattccgtcgccaagtccataccggcc
cggccgcgcgatccggcacaacccaatcttccgttcgacccgatgcccgagcgcatcgag
ccgtgcctggcgctcctgaagccggtcccgccgaaaggcccggattgggtgttcgacggc
tatcgcctggcaatccatatcgagccgaaaggtgtcaggatcatcactcgcggcggtcac
gactggacgcatcgtttcccggcaatcgccgaggccaccagcaagctcggtgtcgggacc
gcgatcctcgatggcgaggccgtcgtgctcgatgaggaaggacggtccgatttcggggcg
ctgcagcgctcgctcggcgggcgcggtggcaagcgttcgtcgacggagtcggtgtttttc
gctttcgacctgctctatttcgatggccacgacctgtcgggcaccgaactctccgtgcgc
cggcatctgcttgagggctttctcgacggccccaccggcgcgatccagtcgtccgaggaa
gtgttcggggatggcgcacttctcgagaaggcttgctccatgggcctcgaggggatcatc
gccaagcatcgggatcggccctatcgctccggccgcaccggcgactggctgaagataaaa
tgcctccagagcgaaagcttcatgatcgtcggctacgagcaatcgctgaccgcccgcgga
gggcttggcagcctgcttctcgccggtcgcaaaggacatgactggatttacgtcggctcc
gtcggaaccgggtttaatacgaaggatgccgagtatttgcgcaagacgctcgaccggctg
aagacaagtaaaccggccgtgccgctcaagggcaagaacctggtgttcgcccagccgacc
ttgatcgcggagatcgagtttcgtggctggacccatgacgggagcctgagccacgcatcc
tacaaggggcttcgcgaggttcaggacaatgccgcggtgtttgacatgagcgaacgggcg
accctctga
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