Sinorhizobium meliloti Rm41: BN406_00784
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Entry
BN406_00784 CDS
T02332
Name
(GenBank) DNA polymerase LigD ligase region
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smi
Sinorhizobium meliloti Rm41
Pathway
smi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN406_00784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smi03400
]
BN406_00784
Enzymes [BR:
smi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN406_00784
DNA repair and recombination proteins [BR:
smi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN406_00784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCM66829
LinkDB
All DBs
Position
792809..793843
Genome browser
AA seq
344 aa
AA seq
DB search
MFSQPKESIRLFAGLCVNGLMTKASSKKPRYTPPIDPMPARVDPCLAALVTKPPKGPDWA
YEVKWDGYRIAVHIEPGRVRILTRGGYDWTERFPTIVDDARRLAVKTAILDGEAVVLDDL
GRSDFGMLQRALGRLPSAVEAGAIVFYAFDLLYLDGRDLRRLPLRERRRLLEPLVAGREG
AVRLSEEVQADGNEFFRVACQHGLEGIIAKHIEKPYRSGRGEWWQKITCKRRDSFVVVGF
EPSTVPSHLGRLLLAARKGDDLVYVGGCGTGWSHELSRELRKLLEGMVTKAPAVALRRKG
AVFVDPVLAAEVEYRAWTDDWKLRHASFKGVRPREDEAAVFELP
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgttctctcagccgaaagagtcaattcggcttttcgcgggcctgtgcgttaatgggcta
atgaccaaagcatcctcgaagaagccccgttatacccctccgatcgatcctatgcccgct
cgcgtcgatccctgccttgcagcgctcgtcactaagccgccgaaggggccggactgggcc
tatgaggtgaaatgggacggttaccggattgccgttcacatcgagcccggccgcgtgcgg
atcctcacgcgcggcggctacgattggacagaacgctttcccacgattgtcgacgacgct
cggcggctcgccgtcaagacggccatccttgacggggaggcggtcgtgctcgacgatctg
ggccggtctgatttcggcatgctgcaacgggcgctcggacgattgccgtcggcagtcgaa
gcgggcgccatcgtcttctatgctttcgacctcctctatctcgacggccgtgatctgcgt
cggctgccgctgcgagagcgccggcgattgctggagcccctcgtcgccggccgggaaggt
gcggttcgcctttcggaagaggtccaggccgatggcaatgaattcttccgcgtcgcgtgc
caacacggcctggagggcatcatcgccaagcacattgagaagccatatcgctcaggtcgg
ggcgagtggtggcagaagatcacctgcaagcgccgggatagtttcgtggtcgtaggcttc
gagccgtcgacggtgcctagtcatctcggccggttgcttctcgcggcgcggaagggcgac
gatctcgtctatgtcggcggctgcggtaccggctggtcacatgagctttcgcgcgagctg
cgcaagctgctcgaggggatggtgacgaaagcgccggcggtggccctcaggaggaagggt
gccgtcttcgtcgatccggtgcttgccgccgaggtcgagtatcgcgcctggactgatgac
tggaagctgcggcatgcctcgttcaaaggagtcaggccgcgagaggatgaagcggcggta
ttcgagcttccctga
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