Sinorhizobium meliloti Rm41: BN406_03940
Help
Entry
BN406_03940 CDS
T02332
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smi
Sinorhizobium meliloti Rm41
Pathway
smi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN406_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smi03400
]
BN406_03940
Enzymes [BR:
smi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN406_03940
DNA repair and recombination proteins [BR:
smi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN406_03940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Stm1_N
Motif
Other DBs
NCBI-ProteinID:
CCM70222
LinkDB
All DBs
Position
pSYMA:430078..432714
Genome browser
AA seq
878 aa
AA seq
DB search
MADNLSKYRAKRDFKKTREPSGEAQVKQSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
LTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEENA
TSIASARSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDLATSTA
ADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRVADGKVTLKTRKGLDWTAKYPE
IADAASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPYESG
RTDTWAKSKCRAGHEVVIGGYARTNGKFRSLLVGVHRGDHFVYVGRVGTGFGAAKVERFF
PKLKALEASKSPFTGIGAPKKEKEVTWLKPELVAEIEFAGWTTDGLVRQAAFKGLREDEP
AKEVQADKPSPPAKTDTPEPGPSAKTRPVRRKGAKAEVMGVLISSPDKPLWPDAGDGEPV
TKEDLARYHEAVGTWLIDHIKGRPCSIIRAPDGIGGEQFFQRHAMQGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
EMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNKRTPLSWAEAKGFAHEVCEQMARDNPDL
YLIKMSKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKSDLDPKRFT
VRTVPALLAKTTAWQDYCDGERPLEQAIKRLGKSRRAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaatctttcgaaataccgtgccaagcgcgatttcaagaagaccagagaacca
agcggcgaggctcaggtcaagcagtcgaaccgccggcggttcgtgatccagaagcacgac
gccacccggcttcactatgatctgcggcttgaactggacggggtgttcaagagctgggcg
ttgaccaagggcccatcgctcgatcctagtgacaagcgactggccgtcgaagtcgaagat
cacccgctcgactatggcgacttcgaaggcacgattccaaagggccagtatggcggcggc
acggtcatgctatgggaccgcggctattgggagccagaaggtaggaagtcacctgaagag
gccctgaagaagggcgacttcaagttcacgcttcatggcaagcggctgcatggcagcttc
gtcctggtgcggatgcgcaacgatcgcgatggcggcaagcggaccaactggctgctcatc
aaacatcgtgacgattactccgttgacgagaacggcgcggcaatcctggaggagaacgcg
acttccatcgcctccgcccgcagcatggagcagatcgccgagggcacgggccgcaagccg
cgaccgttcatgatggcgaacgcggatgtcgaggcagatgccgtctgggacagcaagcat
ggcttggcagcggaagagcgcaagaaggggtctcgcagggatctcgcgacctccacggca
gccgacctgccggattttatcgagccgcagctctgcgagacgcttgcgcggccgccggcc
agcgacgactggctgcatgagatcaagttcgacggttatcggatccagatgcgggttgcc
gacggtaaggtgacgctgaagacgcgcaagggtctcgactggaccgcgaaatatccagag
atcgccgatgctgcgtccgaattgcccgattgcatcattgatggcgaaatctgcgccctc
gacgacaatggcgcgcccgatttcgcagcactccaggccgcgctctcggaaggcaagacc
ggcaaccttgtctacttcgccttcgacctgctgtttgatggcggcgaggacttgcggtcg
atgcgattggtcgagcggaagaagcggctcgaagacttcctcgcggccgggagcgacgat
ccgcgtatccgctacgtcgatcacttcgaatccggcggtgacgcggtgctccgctccgcc
tgcaagctgtcgctcgaaggtatcgtctccaagcagatggatgcgccctacgaatcgggc
cgcaccgacacctgggcgaagtcgaaatgccgggctggtcatgaggtggtgatcggtggc
tatgctaggaccaacggcaagttccgatctctcctggtcggcgttcaccgcggcgatcac
ttcgtctatgtcggccgggtcggcacgggcttcggcgccgcgaaggtcgagcggttcttt
cccaagctgaaggcgttggaagcatcgaagtcacccttcaccggcatcggtgcgccgaaa
aaggagaaggaagtcacctggctgaaaccggagctcgttgccgagatcgagttcgccggc
tggacgaccgacggcctagttcgtcaggcagccttcaaaggcctgcgcgaggacgagccg
gcgaaagaggtccaggccgacaagccgtcaccgcccgccaagaccgacacgcccgagcct
gggccgtccgccaagaccagaccggtgcggcgcaagggcgccaaggccgaggtcatgggc
gtcctcatctccagtcccgacaagccactctggccggacgccggcgatggcgagcccgtg
accaaggaagatctcgcccgctaccatgaagccgtcggaacctggctcatcgatcacatc
aagggccggccctgctcgatcattcgagcacccgacggcattggcggcgagcagttcttc
cagcgccatgcgatgcaaggcacctccaatctgctcgaactggtgaaagtcttcggggac
aagaagccctaccttcagatcgatcggatcgaagggctcgcggcgatcgcccagatcggc
ggaatcgaactacatccctggaactgcgaacccggcaagccggaagtgcccggccgtctg
gtgttcgatctcgatcctggtcccgacgtgccgtttgcgacagtggtcgcggccgcgcgg
gaaatgcgtgaccggctcgacgagctcggcctcgtcagtttctgcaagacgaccggcggg
aagggattgcatgtcgtcacgccattcgctgtgaataagcgcacgcctctgtcatgggcc
gaggctaagggattcgcgcatgaagtttgcgagcaaatggcgcgcgataatcccgatctt
tatctcatcaagatgagcaagagcctcaggggcggaaggatcttcctcgattatctccgc
aacgaccgcatggcgaccgccgtggcgccactgtcgccgcgcgcacggcccggcgccaca
gtctcgatgccgctcaactggacgcaggtgaagtccgatctcgacccgaagcggtttacc
gtccgcaccgtgccggcgctgcttgcgaaaaccactgcctggcaagactattgtgatggc
gagcggccgctcgaacaggcgatcaagcgcctcggaaaatcaagacgggctgcgtga
DBGET
integrated database retrieval system
