Sinorhizobium meliloti Rm41: BN406_03945
Help
Entry
BN406_03945 CDS
T02332
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smi
Sinorhizobium meliloti Rm41
Pathway
smi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN406_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smi03400
]
BN406_03945
Enzymes [BR:
smi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN406_03945
DNA repair and recombination proteins [BR:
smi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN406_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CCM70227
LinkDB
All DBs
Position
pSYMA:complement(434596..435468)
Genome browser
AA seq
290 aa
AA seq
DB search
MFEVKWDGYRLAIHIEPKGVRIITRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGPT
GAIQSSEEVFGDGALLEKACSMGLEGIIAKHRDRPYRSGRTGDWLKIKCLQSESFMIVGY
EQSLTARGGLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEYLRKTLDRLKTSKPAVPLKGK
NLVFAQPTLIAEIEFRGWTHDGSLRHASYKGLREVQDNAAVFDMSERATL
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgaggtgaagtgggacggctatcgcctggcaatccatatcgagccgaaaggtgtc
aggatcatcactcgcggcggtcacgactggacgcatcgtttcccggcaatcgccgaggcc
accagcaagctcggtgtcgggaccgcgatcctcgatggcgaggccgtcgtgctcgatgag
gaagggcggtccgatttcggggcgctgcagcgctcgctcggcgggcgcggtggcaagcgt
tcgtcgacggagtcggtgtttttcgctttcgacctgctctatttcgatggccacgacctg
tcgggcaccgaactctccgtgcgccggcatctgcttgagggctttctcgacggccccacc
ggcgcgatccagtcgtccgaggaagtgttcggggatggcgcacttctcgagaaggcttgc
tccatgggcctcgaggggatcatcgccaagcatcgggatcggccctatcgctccggccgc
accggcgactggctgaagataaaatgcctccagagcgaaagcttcatgatcgtcggctac
gagcaatcgctgaccgcccgcggagggcttggcagcctgcttctcgccggtcgcaaagga
catgactggatttacgtcggctccgtcggaaccgggtttaatacgaaggatgccgagtat
ttgcgcaagacgctcgaccggctgaagacaagtaaaccggccgtgccgctcaagggcaag
aacctggtgttcgcccagccgaccttgatcgcggagatcgagtttcgtggctggacccat
gacgggagcctgcgccacgcatcctacaaggggcttcgcgaggttcaggacaatgccgcg
gtgtttgacatgagcgaacgggcgaccctctga
DBGET
integrated database retrieval system
