Breviolum minutum: v1.2.025512.t2
Help
Entry
v1.2.025512.t2 CDS
T04349
Symbol
symbB.v1.2.025512.t2
Name
(OIST) -
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
smin
Breviolum minutum
Brite
KEGG Orthology (KO) [BR:
smin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smin03019
]
v1.2.025512.t2 (symbB.v1.2.025512.t2)
03041 Spliceosome [BR:
smin03041
]
v1.2.025512.t2 (symbB.v1.2.025512.t2)
03036 Chromosome and associated proteins [BR:
smin03036
]
v1.2.025512.t2 (symbB.v1.2.025512.t2)
Enzymes [BR:
smin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
v1.2.025512.t2 (symbB.v1.2.025512.t2)
Messenger RNA biogenesis [BR:
smin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
v1.2.025512.t2 (symbB.v1.2.025512.t2)
mRNA cycle factors
Common to processing body (P body) and stress granule
v1.2.025512.t2 (symbB.v1.2.025512.t2)
Spliceosome [BR:
smin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
v1.2.025512.t2 (symbB.v1.2.025512.t2)
Chromosome and associated proteins [BR:
smin03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
v1.2.025512.t2 (symbB.v1.2.025512.t2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
LinkDB
All DBs
AA seq
888 aa
AA seq
DB search
MQEMVFTHRNDAPTVYNLQEKVFKMKTSTTTQLQLEKLDRVALDNLREALPHYTKLTDIA
VSGTPLTNEDAVALLRSGASNVQMENCGLNDTRVIAEALLHKSTAALKQLNLRRNGIADL
GPLEDVMQQRPVGSVAGENDGRCSTTLAAMMALSPGVGATHTTPHGGGQLLPMSQLVPSA
AAKGKGFGESQATRFWQLCAGMAIGGASALRAYGKGMGKGGYKGGGYSSGGGYNRSGYSG
GGGGGGYGGSRGGGYSGGMSIQERTEMKRSREADQFFQFQRQNILRGEQRFSDEHWRVEE
GRLFKQAHVHAGIDFKKYDDIEVKAHGGSRKEIPIESFQEACDRFDLPEDLTANIERCGY
NVPTPVQKHSIPAVLDGSDVLVTAQTGSGKTAAFLVPIITAALKAGRKPAKEGAVCPTSV
VLSPTRELCQQITVEAERLTFRSGARVCAIYGGADAIPQLRKFAGGIEIVVCTPGRLEDF
LQRGVLSMEEVKFLALDEADRMLDMGFEPQIREIIENHGMPPAGKGRQTMMFSATFPREI
QNLAEDFLDPKYYSISVGRVGSTTSSVSQRFENLRYGDKFEQLLQSLQEVEGEDGPAKTI
VFANSKFMVDDIQSQLRENRIRCTSMHGGVSQSQRDRALRDLKSGRAHVLVATDVAARGL
DLPGIDHVINFDLPLNGEDYVHRVGRTGRIGNKGVATSFVTNTEPALKDIVRSLKDARKQ
DKTASEVPQWLEEMAWSSRNSRSASPGRGNFRGSSGRGGYSGYQSRERGSYGGGLPSRWP
QGGGGGYRSSSPRSFREGGFRDGGFRDRDGGSQRGYREGNFRNNGYERDERSSFPRNAGS
SRNSRDGRPSYDDDDIFSSSPPRRGGRRDDYLDHAEYPRRRSVSVDGP
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
accgcaccacctccgtggatggtgccaggctgagaagcagtgggcacttctgcgtgggtt
gcttcttgctggctgcgtcccattgtgtcctgacgtattcaggcagctcatgcaagagat
ggtctttacgcatcggaacgatgcgcccacggtctacaatctccaggagaaagtcttcaa
gatgaagacttccaccacaacccagcttcaattggagaagcttgaccgtgtggcgctcga
caacctgcgggaggctttgcctcactacaccaagctcacagacatcgcggtgagcgggac
cccactcacgaatgaggacgcagttgcactgcttcgaagtggagcgagcaacgtgcagat
ggagaactgtggactgaatgacacaagagtcattgctgaagcattgcttcacaagtcaac
agcggcactcaagcagctgaatttacgccgtaacggcattgctgatcttggcccgctgga
ggatgtcatgcagcaacggccagttggctcagtggctggggaaaacgacggacgctgctc
cactacccttgccgccatgatggccttgtcgcctggggtgggggctacccacacgacccc
ccatggcggtgggcaacttttgcctatgagtcaactggttccaagtgccgctgcgaaagg
caaaggctttggagaaagccaggcaactcgcttttggcagctctgtgccggaatggccat
cggtggcgcttcagcattgagagcctatggcaagggcatgggcaaaggtggatacaaggg
tggtggctacagcagtggtggtggctacaaccgtagtggttatagtggtggtggtggtgg
tggcggctatggcggcagccgtggcggtggctactctggcgggatgagcatccaagaacg
caccgaaatgaaacgttcgcgtgaggcagaccaattctttcaattccaacgacaaaatat
actacgaggcgagcagcgtttttcggatgagcactggcgtgtggaggaaggaaggttgtt
caagcaagcccatgtgcatgctggcattgacttcaagaaatacgacgacatcgaggtgaa
agctcatggaggttccaggaaggaaattcccatcgaaagcttccaagaggcctgcgatcg
cttcgacttgccagaggacctcacggccaacatcgaacgctgtggttataacgtgccaac
gcccgtgcagaagcatagcattcctgctgttttggatggaagtgatgtgctggtcacggc
gcagactggaagtggtaagacggccgcctttttggtacccatcatcaccgcggcgttgaa
agcgggacgtaaacccgccaaggagggtgcagtgtgccccaccagtgtggtactttcgcc
tacccgcgagctctgtcaacagatcacagtagaggctgagaggttgaccttccgttcggg
tgcacgtgtgtgtgccatctacggtggagctgatgcgattcctcagttgcgcaaattcgc
cggtggcatcgagatcgtggtgtgtactcccggtcgattggaggacttcctccagcgtgg
tgtcttgagcatggaggaggtgaagtttttggccctggatgaagcagatcgaatgctgga
tatgggttttgaaccacagattcgcgaaatcatcgagaatcatgggatgccaccagctgg
aaaaggtcgacaaaccatgatgttctcagccacctttcccagagagatccagaatttggc
cgaagattttttggatcccaagtattacagcatctccgtaggccgtgtaggtagtaccac
cagcagcgtctcacagcgttttgagaaccttcgttatggcgataagttcgaacaactcct
tcagtccttacaagaggtggaaggcgaggacggtccagcgaagaccattgtctttgccaa
ctccaaattcatggtggatgatatccaatctcaactgcgggagaatcgtatccgttgtac
cagcatgcatggaggtgtgagccaaagccaacgtgatcgtgccttgcgcgatttgaagag
cggtcgggctcatgtcttggtagcaaccgatgtggcagcacgtggattggatctgccggg
aattgatcatgtgatcaacttcgatttgccattgaacggtgaagattatgtgcatcgtgt
cggtcgaacaggtcgtattggcaacaagggtgtagccacctcctttgttaccaacaccga
gccagctcttaaggacatcgtgcgatccttgaaagatgccaggaaacaagacaagacggc
ttctgaagtaccacagtggttagaggagatggcttggtcctctcgcaatagccgttccgc
ctcgcctggccgtggtaactttcgtggaagctctggccgtggtggttacagtggctatca
gtcacgagaacgggggagctatggaggcggactaccttcgcgttggcctcaaggaggagg
agggggttaccgcagcagcagcccgcggagcttccgcgagggcggcttccgcgatggcgg
cttccgtgatcgcgatggtggcagccagcggggctaccgcgagggcaacttccgcaacaa
tggctacgagcgcgacgaacgctccagctttccccgaaacgcgggtagttcccggaactc
ccgcgatgggcggccgagctacgatgatgatgacatcttctcatcatcaccaccacgacg
tggcggaagaagggacgactacttggaccatgccgagtaccctagacgtcgctcagtgtc
tgtggatggcccgtgagatgcttccctgttttttccggttaaaaaaggcaaacctggcca
aagaagcagagaaaagacaatgccaacggcatgttgttgtgttgttttttgtcgtttttt
aaaactggtttggagatatttcacattaagagagattgtttggaggaaataaagacaata
tagagtttttttgctgagtttgcatgagtatatcatgcttacatgatgaatttccacgag
aatgaaaaaatacaaaacatgatgcaagattcatgctttgtgattggcaagccgtgttac
atgcgatttgattcattagatgccttgttcttcggttgagctttgtcgttgctcacacat
ttggatgtggcattcacgacataaatcccttctaactcaaccttcggcgatgatctttga
agatcccaatacgcccaaagagaaacaacaaactaaaaaaggtccttgggcagc
DBGET
integrated database retrieval system
