Breviolum minutum: v1.2.033586.t1
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Entry
v1.2.033586.t1 CDS
T04349
Symbol
symbB.v1.2.033586.t1
Name
(OIST) -
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smin
Breviolum minutum
Pathway
smin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
v1.2.033586.t1 (symbB.v1.2.033586.t1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smin03400
]
v1.2.033586.t1 (symbB.v1.2.033586.t1)
Enzymes [BR:
smin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
v1.2.033586.t1 (symbB.v1.2.033586.t1)
DNA repair and recombination proteins [BR:
smin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
v1.2.033586.t1 (symbB.v1.2.033586.t1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
BRCT_2
BRCT
Motif
LinkDB
All DBs
AA seq
572 aa
AA seq
DB search
MLAQRLRLESLTQIFDGSKSFSVEPKYDGERILAHLDAEAKRVELYTRSAIDYTSAYAPS
MRPVLLQGLLGRQAVLDGEMLAWDEDEAAFIAFGSNRTVAQMNDQRKHLCFVVFDVLFYM
DAEGQSYDLRQTPLKARQDFLAKIVVPKEHWLELVPGLCMSSAEEAQRRLEGAIEARLEG
LVLKDMSSKYFFNARKRGWYKIKPEYDGLSETLDLIVVGAYFGDSARRRAMQGQSTDLAD
HCSQLLGMHLELTFVKGRSFSQLRFLLAALRHSSTPEAAVVTVCRVGTGFSMDQLKEMRA
KLRPHLKRYDPHRAPSWMGGWRGGPKSKPDAVLDSPSHGFVRAAEIVPSEEYEFGHTLRF
PRAVKPFRDDKEWSDANTDKDLREFLVEGARNALTGRRVKAKVEVQSEGEDTDEGAGSPK
KSAASARPRVLRKRSFGVLEGFRPADTAQVPVASELLKGAEVFVVNGDAQYSKADLEAYV
VRHGGRHVQNFLRGRTSLVVAASLSDLRTQNLAKTARVDIVLYTYLFECETAGKMLPLKP
RHMLATSPETKAQLSYAFDQWGDAFYEEGRII
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgt
atatacattttttccatgttttggattgtttttgttttgccgttttgttttctccaactg
tggtgattcgcatctttatacctcaaagcctggcagtcctattgttgctccccccgtttc
acaggacgatggtcatgctggtgcagaacctgtgcaaccttctcaacctgcgcgggtagg
aaacgattccatcctcttttccaagttcaagccgatgctggcgcaacgtttgaggttaga
gagtctcacccagatctttgatggctccaagagcttttcggtggagcccaaatacgacgg
ggaacgcatcttggcgcacctggatgcggaggccaaacgtgtggagctttacactcgcag
cgccattgactataccagcgcttatgctcccagcatgcggccagtcctgttacaagggct
ccttggacgacaggcggtcttggatggtgagatgttggcgtgggatgaggatgaagctgc
ctttatcgcctttggaagtaatcgaactgtggctcaaatgaacgaccagcggaagcactt
gtgctttgttgtctttgacgttcttttctatatggatgcggagggtcaaagctatgactt
gcggcaaactcccttgaaggccagacaagacttcttggcgaagattgtcgtgcccaaaga
acattggctggagctggtgccggggctttgtatgagtagtgcagaagaggctcaacgacg
tttggagggagccattgaggcaaggttggaaggactcgtcctgaaggacatgtcctcaaa
gtactttttcaatgcccgcaagagaggatggtacaagatcaagcccgagtacgatggact
ctctgaaaccttggacctcatcgtggtcggtgcttacttcggagattccgcacgtcgtag
ggcaatgcaagggcaatccacggatctggcagaccactgttctcagctccttgggatgca
tttggagttgacttttgtcaaaggtcgaagcttttcccagctgaggtttctccttgcagc
actgcgacatagctcgactccagaggctgccgtggtgacggtttgcagagtgggaacggg
cttcagtatggatcagttgaaagaaatgcgagccaagcttaggccgcatctcaaacgcta
tgatccccatcgtgcacccagctggatgggtggttggcgtggaggacccaagtcgaaacc
cgatgcggtcttggattctccgagccatggctttgttcgggcagctgagattgttccctc
ggaggagtacgagtttggccacaccctccgcttcccacgagcagtgaagcccttccgtga
tgacaaggagtggagtgatgccaatactgacaaggaccttcgtgagttcttggtggaggg
tgctcgaaatgcattgactggtcgaagggtgaaagccaaggtggaggttcaaagtgaggg
ggaagacaccgatgaaggtgctggaagccccaagaaatctgcggcctcagcccggccgcg
ggtgctgcggaagagatcttttggtgttcttgagggcttccgacctgcggacactgcgca
ggttccggtggcctcggagctcctcaaaggtgcagaagtttttgtggtcaacggcgacgc
ccagtacagcaaggccgatttagaagcttatgtggtacgacacggtggtcgccatgtaca
gaatttcctgcgggggcgcacctcgctggtagtggcagcctcgctatcagatctacgcac
tcaaaacctggcgaaaacagcccgggtggacattgtcctgtacacatatcttttcgagtg
cgagactgctggcaagatgcttccactcaagcctaggcatatgctggcaacgagtcctga
aaccaaggcgcagttatcctatgcctttgatcaatggggcgatgccttctatgaggaggg
caggataatctaacgaaaagcttcattattcctgacagtcacccacgtcatggacacact
aattttgggaaagatcccattgaaacccaaacaccataaaccaatgattttttg
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integrated database retrieval system