KEGG   Breviolum minutum: v1.2.033586.t1
Entry
v1.2.033586.t1    CDS       T04349                                 
Symbol
symbB.v1.2.033586.t1
Name
(OIST) -
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
smin  Breviolum minutum
Pathway
smin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    v1.2.033586.t1 (symbB.v1.2.033586.t1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smin03400]
    v1.2.033586.t1 (symbB.v1.2.033586.t1)
Enzymes [BR:smin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     v1.2.033586.t1 (symbB.v1.2.033586.t1)
DNA repair and recombination proteins [BR:smin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     v1.2.033586.t1 (symbB.v1.2.033586.t1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C BRCT_2 BRCT
LinkDB
AA seq 572 aa
MLAQRLRLESLTQIFDGSKSFSVEPKYDGERILAHLDAEAKRVELYTRSAIDYTSAYAPS
MRPVLLQGLLGRQAVLDGEMLAWDEDEAAFIAFGSNRTVAQMNDQRKHLCFVVFDVLFYM
DAEGQSYDLRQTPLKARQDFLAKIVVPKEHWLELVPGLCMSSAEEAQRRLEGAIEARLEG
LVLKDMSSKYFFNARKRGWYKIKPEYDGLSETLDLIVVGAYFGDSARRRAMQGQSTDLAD
HCSQLLGMHLELTFVKGRSFSQLRFLLAALRHSSTPEAAVVTVCRVGTGFSMDQLKEMRA
KLRPHLKRYDPHRAPSWMGGWRGGPKSKPDAVLDSPSHGFVRAAEIVPSEEYEFGHTLRF
PRAVKPFRDDKEWSDANTDKDLREFLVEGARNALTGRRVKAKVEVQSEGEDTDEGAGSPK
KSAASARPRVLRKRSFGVLEGFRPADTAQVPVASELLKGAEVFVVNGDAQYSKADLEAYV
VRHGGRHVQNFLRGRTSLVVAASLSDLRTQNLAKTARVDIVLYTYLFECETAGKMLPLKP
RHMLATSPETKAQLSYAFDQWGDAFYEEGRII
NT seq 2094 nt   +upstreamnt  +downstreamnt
atatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgt
atatacattttttccatgttttggattgtttttgttttgccgttttgttttctccaactg
tggtgattcgcatctttatacctcaaagcctggcagtcctattgttgctccccccgtttc
acaggacgatggtcatgctggtgcagaacctgtgcaaccttctcaacctgcgcgggtagg
aaacgattccatcctcttttccaagttcaagccgatgctggcgcaacgtttgaggttaga
gagtctcacccagatctttgatggctccaagagcttttcggtggagcccaaatacgacgg
ggaacgcatcttggcgcacctggatgcggaggccaaacgtgtggagctttacactcgcag
cgccattgactataccagcgcttatgctcccagcatgcggccagtcctgttacaagggct
ccttggacgacaggcggtcttggatggtgagatgttggcgtgggatgaggatgaagctgc
ctttatcgcctttggaagtaatcgaactgtggctcaaatgaacgaccagcggaagcactt
gtgctttgttgtctttgacgttcttttctatatggatgcggagggtcaaagctatgactt
gcggcaaactcccttgaaggccagacaagacttcttggcgaagattgtcgtgcccaaaga
acattggctggagctggtgccggggctttgtatgagtagtgcagaagaggctcaacgacg
tttggagggagccattgaggcaaggttggaaggactcgtcctgaaggacatgtcctcaaa
gtactttttcaatgcccgcaagagaggatggtacaagatcaagcccgagtacgatggact
ctctgaaaccttggacctcatcgtggtcggtgcttacttcggagattccgcacgtcgtag
ggcaatgcaagggcaatccacggatctggcagaccactgttctcagctccttgggatgca
tttggagttgacttttgtcaaaggtcgaagcttttcccagctgaggtttctccttgcagc
actgcgacatagctcgactccagaggctgccgtggtgacggtttgcagagtgggaacggg
cttcagtatggatcagttgaaagaaatgcgagccaagcttaggccgcatctcaaacgcta
tgatccccatcgtgcacccagctggatgggtggttggcgtggaggacccaagtcgaaacc
cgatgcggtcttggattctccgagccatggctttgttcgggcagctgagattgttccctc
ggaggagtacgagtttggccacaccctccgcttcccacgagcagtgaagcccttccgtga
tgacaaggagtggagtgatgccaatactgacaaggaccttcgtgagttcttggtggaggg
tgctcgaaatgcattgactggtcgaagggtgaaagccaaggtggaggttcaaagtgaggg
ggaagacaccgatgaaggtgctggaagccccaagaaatctgcggcctcagcccggccgcg
ggtgctgcggaagagatcttttggtgttcttgagggcttccgacctgcggacactgcgca
ggttccggtggcctcggagctcctcaaaggtgcagaagtttttgtggtcaacggcgacgc
ccagtacagcaaggccgatttagaagcttatgtggtacgacacggtggtcgccatgtaca
gaatttcctgcgggggcgcacctcgctggtagtggcagcctcgctatcagatctacgcac
tcaaaacctggcgaaaacagcccgggtggacattgtcctgtacacatatcttttcgagtg
cgagactgctggcaagatgcttccactcaagcctaggcatatgctggcaacgagtcctga
aaccaaggcgcagttatcctatgcctttgatcaatggggcgatgccttctatgaggaggg
caggataatctaacgaaaagcttcattattcctgacagtcacccacgtcatggacacact
aattttgggaaagatcccattgaaacccaaacaccataaaccaatgattttttg

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