Stenotrophomonas maltophilia K279a: Smlt2530
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Entry
Smlt2530 CDS
T00718
Name
(GenBank) putative DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Smlt2530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sml03400
]
Smlt2530
Enzymes [BR:
sml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Smlt2530
DNA repair and recombination proteins [BR:
sml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Smlt2530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAQ46010
UniProt:
B2FSA7
LinkDB
All DBs
Position
complement(2552181..2554730)
Genome browser
AA seq
849 aa
AA seq
DB search
MSLVEYRRKRRFDQTREPEPGKALPEGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYAAFEGEIPKGQYGGGHVAQFDHGVWATQGDPEAQLAK
GHLRFELFGAKLKGGWHLVRSGKPARQPQWLLFKDDDEFASDIEADDLLADVAVAPPEDL
KRAGAGKTAKKKLTVVSPTRTRRKNWAKKALALGKARRAAAPSGPFEPQLAKLGDAPPQG
GQWVHEIKWDGYRILATVAEGNVQLWSRNALEWTGKLPEIRDAIAALGLTSAALDGELIA
GAGTKEDFNLLQATLSGERQGVLTYALFDLLHLDGVDIADAPLLERKALLHSVLEGQGRP
LAFSSHVQGDGDEAYRLAGEQHFEGIISKRADRSYHSGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLARPDPKHGWLYVGRVGSGFSDELIGEVSRRIEGGGGRKPTAHVPTQ
DTDLRAATWFAPRFVVEVFYRGIGGQKLLRQASLKAVRADKDIADLEDSDRAGKAPAAGG
THAPSRPGRRAKKPPATGRTPPALSSPGKILFPGDGYTKQEVWDYYAAVMEHLLPEVVDR
PLSIIRCPSGTAKPCFFQKHHTAGLELVDPVRLKEESGINAHYLVVRDAASLLELVQFNA
LEFHPWGSHAEAPDKADRVVFDLDPGPDVPFAEVKKAATDIRKLLAQLQLESFLRVSGGK
GLHVVVPLNPGCDWDLTKRFAKGFADALAQSEPQRFLATATKSLRNKRIFVDYLRNGRGA
TAVASYSLRARPGAPVALPIAWGDLAKLKRADAFTIKDVPAKLKRRRKDPWAGIGEVKQN
LARWAQADP
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggtcgagtaccgccgcaagcgtcgttttgaccagaccagggagcccgaaccg
ggcaaggcgctgccagaaggccaacgcgccattttcgtggtgcagttgcatcatgccagc
cgcaggcactacgacttccgtctgcaggtgggtgacgcgctgaagagctgggccgttccc
aagggccccagttacgacccgaaggtcaagcgcatggcggtggaggtggaggatcatccc
gtcgactacgcagcatttgaaggcgagattcccaaaggccagtatggcggcggacatgtc
gcccagttcgaccacggtgtgtgggccacgcagggtgacccggaagcccagctcgccaag
ggccatctacgcttcgagctgttcggcgccaagctcaagggtggatggcatctggtccgt
tccggcaagcctgcgcgccagccacagtggctgctgttcaaggacgacgacgaatttgcc
agcgatatcgaggcagacgatctgctggcggatgtcgctgtagcgcccccggaggacctg
aagcgtgccggggccggaaagaccgcgaagaagaagctcacggtcgtatcccccacacgc
acccgacgaaagaactgggcgaagaaggccctggcgctcggcaaggcgagaagggcggcg
gcgccgtccgggccgtttgagccgcagttggccaagctgggcgacgcgccgccccagggc
gggcagtgggtgcatgagatcaaatgggatggataccgcatccttgctacggtggctgag
ggcaacgtgcagctgtggtcgcggaacgcactggaatggaccggcaagctgcctgaaata
cgtgacgcgatcgcggcactgggcctcacctcggcggcactggacggtgagctcatcgcc
ggcgccggcaccaaggaagacttcaacctgctgcaggccacgctctccggcgagcggcag
ggcgtcctgacgtatgcattgttcgatctgctgcatcttgatggcgtggacatcgccgat
gcgcccttgctggaacgcaaagccctgctgcactccgtgctggaggggcagggcaggcca
ttggcgttcagttcgcatgtgcagggggatggcgacgaggcctatcgcctggccggtgag
cagcacttcgaaggcatcatttccaagcgcgccgatcgcagctaccacagcggccgcagt
gaggattggcgaaagaccaaacagctggccagcgacgagttcgcggtggtcggatacacc
gcgccgaaaggcagccgcaccgggttcggctcgctgctgctggcgcggccagacccgaaa
catggctggctctacgtcggccgcgtcgggtccgggttctcggacgaactgatcggcgaa
gtcagcaggcgcatcgaaggcggcggcggccgcaagccgacggcgcacgtgcccacccag
gacaccgaccttcgcgccgcgacctggttcgcaccgcgtttcgtggtggaggtcttctat
cgcgggattggcgggcagaagctgttgcgccaggcatcgctgaaggcggtacgggcggac
aaggacatcgccgatctcgaagattccgatcgcgccggaaaggccccggctgcgggtggc
acgcatgcaccctcgcgacccgggcgcagggcgaaaaaaccacccgctaccggccgcaca
ccgcccgcgctttcgtcccccggcaagatcctgtttcctggcgatggctacaccaagcag
gaggtatgggactactacgcagcagtgatggagcacctcctgcccgaggtggttgatcgt
ccgctgtcgatcatccgatgccccagtggcaccgcaaagccctgcttcttccagaaacac
cacacagccgggctggaactggtcgatccggtaaggctgaaggaggaaagcggcatcaac
gcccattacctggtggtgcgtgacgcggccagcctgcttgaactggtgcagttcaacgcg
ttggagttccacccttggggcagccacgccgaagcgcccgacaaggccgaccgggtggtg
ttcgatctggatccaggaccggacgtaccctttgcagaggtcaagaaggcggcaaccgac
atccgcaaactgctcgcgcagctgcagttggaatcgttcctgcgtgtctccggcggcaag
ggcctgcacgtggtggtgccgctcaacccgggatgcgactgggacctgaccaagcgcttt
gcgaagggcttcgccgatgcgctggcgcaatccgagccccagcgattcctggcaacggcc
accaaaagcctccgcaacaagcggatcttcgtcgactacctgcgcaacgggcgcggtgcc
acggcagtcgcgtcctactcgctgcgggcgcggccgggcgcaccggtcgcgttgccgatc
gcctggggcgatctggcgaaactcaagcgcgcagacgcgttcacgatcaaggacgtgcca
gcaaagctcaagcggcggcgcaaagacccctgggccggcatcggggaagtgaaacagaat
ctggcgcgctgggcgcaggcagacccgtag
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