Schistosoma mansoni: Smp_025130
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Entry
Smp_025130 CDS
T01095
Name
(RefSeq) putative rna binding motif protein
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_025130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_025130
Spliceosome [BR:
smm03041
]
Complex B
Other components
Prp19-related factors
Smp_025130
Complex C
Smp_025130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
RRM_occluded
zf-CCCH_4
zf-CCCH
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
8352411
NCBI-ProteinID:
XP_018654979
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Position
W:complement(36473758..36477008)
Genome browser
AA seq
425 aa
AA seq
DB search
MAASKGANTYNRQNWEDSSFPILCETCLGPSPFVRMMKEKYGKECKICDRPFTVFRWCPG
PKARFKKTEVCQSCAKIKNVCQTCLFDLEYGLPVEVRDKALRLSQQLPKNDVNREYFHQQ
IEQNLEVEGDITAPYGGNQLIGKAISNTASASSSSGGGGTDLLLKLARTAPYYRRNRPHI
CSFWVKGECRRGEECPYRHEKPTDPDDPLSDQNLRDRYYGHDDPVAAKLLSKYDTMPKLV
PPEDRTITTLYIGGIPDGMTEKDLRNHFYQFGELRSVNLHAKQHCAFIQFATRGAAERAA
ERTYDRLILGGHRLTVNWGKSPAALAAANSHSSTETGDISLPPVPGLPLPPVLPPTNLLN
KAMTIGLSGNFFMTPPPPPPPPPPPTTKTLIGSSSDHVSSSRMPLIPPPIQLAPPVAEPP
PPGGK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggcatctaaaggtgccaacacctacaaccgtcagaactgggaagactcgtcattt
cccattctatgtgagacatgcttaggaccaagtcccttcgttcgaatgatgaaagagaaa
tatggcaaggagtgtaaaatttgtgatcgcccctttactgtatttcgttggtgtcctggt
cccaaagccagattcaaaaagactgaagtctgtcagagctgcgcaaagatcaaaaatgtt
tgccagacatgtttgttcgacctcgaatatggtcttcctgttgaagtccgtgataaagca
cttcgtttatcacaacaattgccgaaaaatgatgttaatcgagaatatttccaccaacaa
attgaacagaaccttgaagtggaaggtgacataacagctccatatggaggaaatcagcta
attggaaaagctatttcaaacacagcgtcggcaagcagttctagcggtggtgggggcaca
gatttactattaaagttagcccgtactgcaccgtattatcgtagaaatcgcccacacata
tgctctttttgggtgaagggtgaatgtaggagaggagaagaatgtccatataggcatgaa
aagcctaccgatcctgatgatcccctttctgaccagaatctgagagaccgttactacggc
cacgatgatccagtggcagccaaattgctgtcgaaatatgacacaatgcctaaacttgtt
cctcctgaggatcgtacaataaccacactatatattgggggtattcctgatggaatgaca
gaaaaagaccttcgcaatcatttttaccagtttggagagctacgttctgtaaatctccat
gccaaacaacattgtgctttcatacagttcgcaactagaggtgccgctgaacgtgcagct
gagaggacctatgatcgattaattttgggtggtcatcgactaacagtcaattggggaaaa
tcaccagcagctttggcggctgcgaactctcattcatcaacagaaactggcgatataagt
ctgcctcctgttcctggtctacctttaccacctgtcttaccgcctaccaacttactgaat
aaagctatgactatcggtcttagcgggaatttctttatgacacctccaccaccaccacct
cccccgccgcctcctactaccaagacattaataggttccagttccgatcatgtttccagt
agtaggatgccacttattccacctccgattcaacttgcaccaccagttgctgaaccacca
cctcctggaggtaagtaa
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