Selaginella moellendorffii: SELMODRAFT_168695
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Entry
SELMODRAFT_168695 CDS
T01496
Symbol
PUB59-2
Name
(RefSeq) ubiquitin-protein ligase, PUB59
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
smo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_168695 (PUB59-2)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_168695 (PUB59-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_168695 (PUB59-2)
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_168695 (PUB59-2)
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_168695 (PUB59-2)
Enzymes [BR:
smo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SELMODRAFT_168695 (PUB59-2)
Spliceosome [BR:
smo03041
]
Complex B
Other components
Prp19 complex
SELMODRAFT_168695 (PUB59-2)
Complex C
Prp19-CDC5 complex
SELMODRAFT_168695 (PUB59-2)
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
U-box type E3
SELMODRAFT_168695 (PUB59-2)
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
SELMODRAFT_168695 (PUB59-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
U-box
WD40_like
Ge1_WD40
zf-Nse
IspD
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
9634978
NCBI-ProteinID:
XP_002966895
JGI:
168695
UniProt:
D8R7B2
LinkDB
All DBs
Position
Unknown
AA seq
520 aa
AA seq
DB search
MFCAISGLTPEEPVISKRSGLLFERRLIEKHLAENGTCPVTGESLTEEDLLPVKTNKAVK
PRPVTATSIPGMLGMFQNEWDAVVLSNYHLEQQLNNARQELSHALYQHDAACRVIARLKT
ERDDARTLLAQAELQRPAALPEADAVTSNGKREAELEQLPPAKTLKQGISDEMIAELTQC
NADLSSLRKKRQIPPTLVKAENLEQYSVISSHPLHKTSRPGILSIDIHHQKDVILTGGND
GNAIVFDRSSGEIVASLVGHSKKVTSVKFVARDDLVLTASADKTVKIWQGGEEGAYSCKQ
TLKEHSAEIRAITVHPTNRFFVTASDDKTWAFYDLNSGTCTTQVTDAAVQDGYTAASFHP
DGLILGTGTAESLVRIWDVKSQASSNNVAKFEGHSGPVTELSFSENGYFLATAASDGVKV
WDLRKLKNFRSFSPYDPSTPTSTVQFDHSGSYLALAGSDIRVFQTGSVKQEWNLVKTFPD
LSGSNKVTCVRFGPDASFLAVGSTDRHLRILGAPVTTTDA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgttctgcgccatctctggattgacgccggaagagcccgtgatttccaagcgctctggg
cttcttttcgagaggaggctgatcgagaagcatcttgcggaaaatgggacttgccctgtc
actggagagtccttgaccgaggaagatctcttacccgtgaagactaacaaggccgtgaag
ccgaggcccgttacagcgacgagcattcctggaatgcttggaatgtttcagaatgaatgg
gatgcggttgtcttgtcgaactaccacttggagcagcaacttaacaatgctcgtcaggag
ctcagccatgccctctatcagcatgatgcagcttgccgcgtgattgccaggctgaaaacc
gaaagggacgatgcgagaactctacttgctcaagcagaactacaaaggccggcggctcta
ccagaggccgatgcagtaactagcaacggcaaacgggaggcagagctggagcaactgcca
cccgctaaaacgctcaagcaggggatctctgacgagatgatagcagaacttacgcagtgc
aatgctgacctttctagtttgcgaaagaagcggcagattccacccacattggtgaaagcc
gaaaatctagaacagtatagcgtgatttcaagccatcctttgcacaagactagcaggccg
ggtatattatctatagatatccatcatcagaaggatgtcattctaacaggcggaaatgac
ggcaatgcaattgtctttgaccgctcctctggtgaaatcgttgcatctcttgttggtcat
agcaagaaggtgacgagtgtaaaatttgttgcccgagatgatctcgtcttgactgcttcg
gctgataagacggtaaaaatttggcaaggtggtgaggaaggggcatatagctgtaaacag
acgcttaaggaacacagtgctgagattcgggcgattaccgtccatccaacgaacagattt
tttgtaacagcatcagatgacaaaacatgggccttctacgacctcaattctggcacttgt
acaacgcaggttaccgatgcagcagtacaagatggatatacagccgcttccttccatcct
gatggcttaatccttggcactggaactgcggaatcgttggttcgcatttgggacgtgaag
tcacaggcaagctctaacaacgttgccaagtttgaaggacactctgggcccgtgactgaa
ctatcgttctctgaaaatggttacttcctggctactgccgccagcgatggcgtgaaggtt
tgggatctgcgcaagttgaaaaactttcgatcgttttctccatacgatcctagcacacca
accagcactgttcaattcgatcacagtggctcctatctcgcgctcgctggctcagatata
agagtgttccaaacgggaagtgtgaagcaggagtggaatcttgtgaagacctttccagat
ctctcgggatcaaacaaagttacgtgcgtcaggtttggcccggacgcctccttccttgcg
gttggaagcactgacagacatcttcgtatactgggagctcctgtcacgactacggatgca
tag
DBGET
integrated database retrieval system
