Sphingomonas morindae: LHA26_06875
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Entry
LHA26_06875 CDS
T08557
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
smor
Sphingomonas morindae
Pathway
smor02020
Two-component system
smor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smor00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LHA26_06875 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LHA26_06875 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smor03021
]
LHA26_06875 (rpoN)
Transcription machinery [BR:
smor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LHA26_06875 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Rv2175c_wHTH
HTH_Crp_2
HTH_15
HTH_3
Phage_CII
HTH_31
Motif
Other DBs
NCBI-ProteinID:
USI74169
LinkDB
All DBs
Position
1:1414704..1416155
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AA seq
483 aa
AA seq
DB search
MGLGPRLDLRQTQSLVMTPQLQQAIKLLALSNLEIEAFVAEELEKNPLIEAGGEDGAAEI
AETIEPVADPLPDSLAGGGEQALDIDPGEERFQDSAADAMAGMAATAGGSGEDAPDLDQF
AAALPTLAEHLDQQIGTLCSGEDLAIARHLIACLDEAGYVAVPLDEVAARLGQPLARVER
ALAAVQSLDPTGVGARDLAECLALQAREADRYDPAMATLIGHLDLLARGQIAALRRLCGV
DEEDFADMVRELRAYDPKPGARFAAAEASPVVPDIFVTATTAGGWSVELNAATLPRLIVN
RRYQAELGHAARDPASKAWLAECATSANWLIKALDQRARTIVRVATEIVRLQDGFFRHGV
EQLRPLTLRTVAEAIGMHESTVSRVTSNKYLACGRGLFELKYFFTSAIQAADGGQAASAA
AVKNHIARLIAEEPADAVLSDDALVDLLRARGFDIARRTVAKYREALGLGSSVQRRRQRR
IAG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgggcctcggcccgcgcctcgatctccgccagacccagtcgctggtcatgacgccgcag
ctccagcaggcgatcaagctgctggcgctctccaatctcgagatcgaggcgttcgtcgcc
gaggagctggagaagaatccgctgatcgaggcgggcggcgaggatggcgcggcggagatc
gccgagacgatcgagcccgtcgccgatccgctgcccgattcgctcgcgggcggcggcgag
caggcgctggacatcgatcccggcgaggagcgatttcaggattcggcggcggacgccatg
gccggtatggccgccacggccggcggcagtggcgaggatgcgcccgatctcgatcagttc
gccgccgccctgccgacgctggcggagcatctggaccagcagatcggcacgctctgttcg
ggtgaggatctcgccatcgcccggcatctgatcgcctgtctcgacgaggcgggctatgtc
gccgtgccgctggacgaggtggcggcgcggctcggccagccgctcgcccgcgtcgaacgc
gcgctggcggcggtgcagagcctcgatcccaccggcgtcggcgcgcgcgatctcgccgaa
tgcctggcgctccaggcgcgcgaggcggaccgctatgatcccgccatggcgacgctcatc
ggccatctcgatctgctcgcgcgggggcagatcgccgcgctgcgacggctgtgcggcgtc
gacgaggaggatttcgcggacatggtgcgcgagctgcgcgcctatgatcccaagcccggc
gcgcgcttcgccgccgccgaggcgagcccggtggtgcccgacatcttcgtcaccgccacc
accgccggcggctggtcggtggagctgaacgccgccaccctgccgcggctgatcgtcaac
cgccgctaccaggccgagctgggccatgccgcgcgcgatccggcgagcaaggcgtggctg
gccgaatgcgccaccagcgccaattggctcatcaaggcgctggatcagcgcgcccgcacc
atcgtgcgtgtcgccaccgagatcgtccggctccaggatggctttttccgccacggcgtc
gagcagctgcgcccgctcacgctgcggaccgtggccgaggcgatcggcatgcacgaaagc
accgtcagccgcgtcacctccaacaaatatctcgcctgcgggcgcggcctgttcgagctc
aaatatttcttcaccagcgccatccaggcggcggatggcggccaggcggcctcggcggcg
gcggtgaagaaccatatcgcgcggctgatcgccgaggagccggccgatgcggtgttgtcg
gacgatgcgctggtcgatctgctgcgcgcgcgcggcttcgatatcgcgcgccgcaccgtc
gccaaatatcgcgaggcgctggggctcggctcgtcggtgcaacggcggcggcagcggcgc
atcgccggatga
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