Sordaria macrospora: SMAC_02354
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Entry
SMAC_02354 CDS
T01610
Name
(RefSeq) uncharacterized protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
smp
Sordaria macrospora
Pathway
smp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SMAC_02354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smp03041
]
SMAC_02354
03009 Ribosome biogenesis [BR:
smp03009
]
SMAC_02354
Enzymes [BR:
smp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SMAC_02354
Spliceosome [BR:
smp03041
]
Complex A
U2 snRNP components
U2 related factors
SMAC_02354
Complex B
SMAC_02354
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
SMAC_02354
Ribosome biogenesis [BR:
smp03009
]
Eukaryotic type
90S particles
Helicases
SMAC_02354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
SRP54
HA2_N
AAA_19
AAA_23
T2SSE
AAA_30
NB-ARC
nSTAND3
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
10808246
NCBI-ProteinID:
XP_003350683
UniProt:
F7VPB9
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MASHDDKGVKRSNMEDNGQDSKRIKRAENGDVAPEKYNPYLAHLNEDGNGNGNGNNGDFE
SPLDSFERHNTTAVQAAQAEDSELNPWTGQPHSQRYFDILKTRRDLPVHKQRQEFLDMYH
NTQILVFVGETGSGKTTQIPQYVLYDELPHTNGKLIACTQPRRVAAMSVAQRVANELDVE
LGQEVGYSIRFENRTGPKTMLKYMTDGQLLRESMHDHDMSRYSCIILDEAHERTLATDIL
MALLKQIAARRKDLKIIVMSATLDAQKFQSYFYNAPLLAVPGRTFPVEIFYTPEPERDYL
EAAVRTVLQIHATEPEGDILLFLTGEEEIEDACRRISLEVDDMIRESDAGPMKVYPLYGT
LPPAHQQRIFEKAPEPLRKGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKIYNPR
SRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAFKKELIEQTYPEILRSNLANT
VLELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTRLGGMASEFPLDPA
LAVMLISSPEFYCSNEILSIVSLLSVPSIWVRPNNARKRADEMKMQFAHPDGDHLTLLNA
YHAYKGAETNGEDMKRWCHEHFLSYRHLSSADNVRAQLKRIMETHDIDLVSTPFQDKNYY
TNIRRALLAGFFMQVAMRESSNSKVYKTVKDDQLVMIHPSTSVTSPYDWVVYNEFVLTTK
QYVRTVTNIRPEWLLEIAPVYYDLDTFEKGEIKSALTRITDKVKRRQAIKGSGSALSGGS
EEKDTKKDKPSLTPMNVTEFIDLVGVVVEAKDENLEKKENMKKSKKRWRKGRKKTKKEAA
LLVPPV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggccagccacgacgacaaaggcgtcaagagatccaacatggaggacaacggccaggac
tcgaagcgcatcaagcgcgccgagaacggtgatgttgcccccgaaaagtacaacccctat
ctcgcccaccttaacgaggacggcaacggcaacggcaacggcaacaatggcgactttgaa
tcgcccctcgactccttcgagagacacaataccaccgctgtccaggctgcccaggccgag
gactcggagctcaacccgtggactggccagccgcactcgcagagatacttcgacatcctc
aagacgaggcgcgacctccccgtccacaagcagcgccaggagttcctcgacatgtaccac
aacacccagatcctcgtcttcgtcggtgagacgggttccggaaagaccacccagattccc
caatacgtcctctacgacgagctcccccacacgaacggcaagctcatcgcctgtacccag
ccccgaagagtggcggccatgtcggttgcccagcgtgtcgcgaacgagttggatgtcgag
ctgggccaggaagtcggttacagcatccgtttcgagaacaggaccggccccaagaccatg
ctcaagtacatgaccgatggtcagctcctgcgcgagtctatgcacgaccacgacatgtcc
cgctacagctgcatcattctcgatgaagcccacgaacgtaccctcgcgaccgatatcctc
atggccctgctcaagcagatcgccgcccgccgcaaagacctcaagatcattgtcatgtct
gccaccctcgatgcccaaaagttccagtcctacttctacaacgccccattgctcgccgtc
cccggtcgtaccttccccgtcgagatcttctatacccccgagcccgagcgtgactacctc
gaggccgccgtacggaccgtgctgcagattcacgccaccgagcccgagggagacatcctg
ctcttccttaccggtgaggaggagattgaggatgcttgcaggagaatcagcttggaggtg
gacgatatgattcgcgagtcggatgctggccccatgaaggtctaccctctttacggcact
ctccctcctgcgcaccagcagcgcattttcgaaaaggctcccgagcccctgcgcaagggt
ggcaggcctggtcgcaaggtcattgtctcgaccaacattgccgaaacgtccttgacaatc
gatggtatcgtctacgtcgtcgaccccggtttcagcaagcaaaagatttacaacccccgc
tctcgtgtcgagtccctgttggtttctcctatttcgaaggcctctgctcagcaaagagct
ggtcgtgccggtcgtacacggcccggtaaatgcttccgtctttacaccgagaaggctttc
aagaaggagcttattgagcagacttaccctgaaattctccggtctaacttggccaacact
gttttggagttgaagaagcttggtgtcgaggatttggtacatttcgatctcatggaccct
cctgcgcccgagaccatgatgcgcgccctggaggagctcaactacctcgcctgcttggac
gacgatggtgagcttacgcgcctcggtggtatggcctccgagttcccgctcgaccccgcc
cttgccgttatgcttatctcgtcgcccgagttctactgctctaacgagatcctctccatc
gtatcccttctctccgtcccctcgatatgggtgcgccccaacaacgcgcgcaagcgtgcc
gacgagatgaagatgcagtttgcccaccccgacggcgaccacctgacgctgctaaacgcc
taccacgcctacaagggcgccgagaccaacggcgaggacatgaagcgttggtgccacgag
cacttcctctcgtaccgccacctgtcgagcgccgacaacgtccgggcccagctcaagcgt
attatggagacgcacgacattgacctggtcagcacgccgttccaggacaagaactactac
accaacatccgccgcgcgcttctggctggcttcttcatgcaggttgccatgcgcgagagc
agcaacagcaaggtgtacaagacggtcaaggacgaccagcttgttatgatccatcccagc
acgtcggtgacgagcccttacgactgggtcgtttacaatgagttcgtgctcaccaccaag
cagtacgtcaggacggtgaccaacattcgtcctgagtggcttcttgaaattgcccccgtc
tactatgacctcgatacctttgagaagggcgagataaagtcggcgctgactcgtatcacc
gacaaggtcaagcggaggcaagccatcaagggcagcggcagcgctctgagtggcggttct
gaagagaaagacaccaagaaagataagccgagtctcacgcccatgaacgtgacggagttc
atcgaccttgttggtgtggtggttgaggccaaggatgagaacttggagaagaaggagaat
atgaagaagagcaagaagagatggaggaagggaagaaagaagacgaagaaggaggcggca
ctgctggtgccaccagtgtaa
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