Sinorhizobium meliloti BL225C: SinmeB_1662
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Entry
SinmeB_1662 CDS
T01884
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smq
Sinorhizobium meliloti BL225C
Pathway
smq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SinmeB_1662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smq03400
]
SinmeB_1662
Enzymes [BR:
smq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SinmeB_1662
DNA repair and recombination proteins [BR:
smq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SinmeB_1662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AEG04573
LinkDB
All DBs
Position
complement(1733818..1734828)
Genome browser
AA seq
336 aa
AA seq
DB search
MARASSKKPRDLPPTDPMPARVDPCLATLVDKPPKGPDWAYEVKWDGYRIAVHIEPGRVR
ILTRGGYDWTERFPSIVDDARRLAVKTAILDGEAVVLDDKGRSDFGMLQRALGRLPSAVE
AGAIVFYAFDLLYLDGRDLRRLPLRERRRLLEPLVACPEGAVRLSEEVQADGDEFFRVAC
AHGIEGIIAKHVEKPYRSGRGEWWQKITCKRRDSFVIVGFEPSTVPGHLGRLLLAARKDG
ELVYVGGCGTGWSNQLSRELRKLLEGMATKTPAVSLRRKGAVFVEPVLVAEVEYRAWTDD
GKLRHASFKGIRQRADDAVVFEMADNIRSGFDDRIE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggccagagcatcctcaaagaagccccgcgatctccctcctactgatcctatgccggcg
cgggtcgatccctgccttgccacgctcgtagacaagccgccgaaagggccggactgggcc
tatgaggtgaaatgggacgggtaccgaattgccgtgcacatcgagcccggccgagtgcgg
atactcacgcgcggggggtacgactggaccgaaaggtttccctcgatcgttgacgacgcg
cggcgccttgccgtgaagacggccatcctagacggcgaggcggtcgtgctcgacgacaaa
ggccggtcggacttcggcatgctacagcgggcgctcgggcgattgccctcggcagtcgaa
gccggcgccatcgtcttctacgccttcgatctcctctacctcgacgggcgcgatctgcgc
cgcttgccgcttcgcgagcgccggcggctgctcgagccgcttgtcgcctgcccggaaggg
gcggttcgcctttcggaagaggtgcaggctgacggcgacgagttcttccgcgtcgcctgc
gcgcacggcattgaaggcatcatcgccaagcatgtcgagaagccatatcgcagcggccgc
ggcgaatggtggcagaagatcacctgcaagcggcgcgacagcttcgtgatcgtcggcttc
gagccgtcgaccgtgcctggtcatctcggccggctgttgttggcggcgcgcaaagacggc
gagctcgtctacgtcggtggatgcggtaccggctggtcaaaccagctttcgcgcgagctc
cggaagttgctcgagggcatggcgacgaaaacgccggccgtatccctgaggagaaaaggc
gccgtctttgtcgagccggtgctggtcgccgaggtcgagtatcgcgcctggacggatgac
gggaagctgcggcatgcatcgttcaaggggatcagacagcgggcggacgatgcagtcgtg
ttcgagatggccgacaatattcgaagcgggtttgacgaccgtattgaatag
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