Stenotrophomonas maltophilia R551-3: Smal_0026
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Entry
Smal_0026 CDS
T00733
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smt
Stenotrophomonas maltophilia R551-3
Pathway
smt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Smal_0026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smt03400
]
Smal_0026
Enzymes [BR:
smt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Smal_0026
DNA repair and recombination proteins [BR:
smt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Smal_0026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ACF49731
UniProt:
B4SR30
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Position
31048..33525
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AA seq
825 aa
AA seq
DB search
MSLHQYRRKRRLGGGAGQTPEPDDTPARGDPKRRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVDVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDGEARDAEADDLLTAPMPK
RAPAAKKRSVERAAAAARTTTRKADARWHARALKLDGARDTPYPRAFKPQLTDHRDSAPD
GARWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPELVQAVLALPVRDARLDGELV
VLDPDGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRVPLLERKALLKDLIGPAP
GTLAFSEHVIDHGPQVFDASGGAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFVIVG
HTAPKGSRVGFGSLLLATPDKAGLRYVGRVGTGFDDDSLRALLKALQPLAVNAPVLQLPA
HVPFRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADTEAGGE
VQITHPERVVFPKEKLSKGDVADYYQRVARWILPELAGRPLSLLRCPDGVGRACFFQKHH
GPGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVIDPEHPDRLVF
DLDPGEGVSWAQVKAGARDVRDRLQQVGLKSFVRLSGGKGVHVVVPMQPKAGWDEAKAFC
EAFAQAMALEQPDRYVATMSKAKRNGVIFIDWLRNTRGATSVCSWSLRARDGAGVAVPLR
WEELARVSAADAFPMAKALARAKRLKGDPWQGIERLKQTLPSLKR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcaccagtaccggcgcaagcgcagactgggtggtggcgccggacagacgccg
gagcctgacgacacgcccgcacgcggcgatccgaagcggcggccgaccttcgtcatccag
ctgcatcacgcaagctcgcgtcactatgacttccgcctggaaatggacggcgtactgaag
agctgggccgtgcccaagggaccttcgctgcgcgtcggtgagaagcggctggccgtggag
gtggaagatcacccgttgtcctacgccggtttcgaaggagacattcctgaaggccactat
ggcgctggccacgtggatgtcttcgatcacggcacctgggcctgtgaaggtgatccactg
caggcgctggcggctggaaagatcgacttcgtgctgcacgggcaacgcctggccggtggc
tggaagctggtgcgtacggcaatgaaagggcgtcaggtgcagtggctgctgatcaagcgc
gacgatggcgaagcgcgcgacgccgaggcggatgacctgctgacggcaccgatgccgaaa
cgagcgcctgcggcgaagaagcgttccgtagagcgtgctgcagctgccgcacgcacgacc
acacgcaaggctgatgcgcgctggcatgcgcgcgcgctgaaactggacggtgcacgcgat
acgccctatccacgcgcgttcaaaccgcagttgaccgatcatcgcgacagcgcgccggac
ggcgcgcgctggctgcacgagatcaagtgggatggttatcgcctgctggccgatctgcac
gatggcgaggtgaagctccgctcccgcaacggcctggattggactgatgattttcccgag
ctggtacaggccgtgctggcactgccggtgcgtgatgcgcggcttgacggcgaactggtg
gtgctggatccggatggacgcagcgacttcgcagcgctgcagcgggtgatcgacggtagt
tcgaagcaaccgctgcgctacatcgtgttcgatcttccgggggtggccggcgtggacatc
agtcgtgtgccgttgctggaacgcaaggcgctgctgaaggatctgatcgggccggcgccc
ggcactctggccttcagcgaacacgtgatcgaccatggaccgcaggtgttcgacgccagc
ggtggggccggcttcgaaggcatcgtcagcaagcaggtggatgcgccgtatgtgaacacc
cgcgcgcgcagctgggtcaaagtgaagcacgaagacaccgacgagttcgtgattgtcggc
cacacggcacccaagggttcccgggtgggatttggttcgctgcttctggccacgccggac
aaggctggcctgcgctatgtgggccgcgttggcaccggcttcgacgacgatagcctgcgc
gcgctgctcaaggcactgcagccgttggcagtgaatgcaccggtgctgcagctgccagcg
catgtgccgttccgtgccgccagcgtgcgctgggtgaaaccggtgacggtggcggaggtg
gcattccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaagcggctgcgc
agcgacaagcagaaagaggatctgggtatgagcacagccgataccgaagccggaggcgag
gtccagatcactcatccagagcgggtggtgtttccaaaggagaagctgagcaagggcgac
gtggccgactactaccagcgcgtggcgcgttggatcctgcccgaacttgccggacgtccg
ctgtcactgctccggtgcccggacggcgtgggcagggcctgcttcttccagaagcaccac
ggtcccggcctgggcgatgccgtgcacgcggttccgctgcaacagaagagcggccgcgag
gattatgtctatatcgacgatgcacggggcctgttgcagctggtgcagatgaacaccctg
gagctgcatccttggggcgcgaccgtgatcgatccagagcatccggatcgcctggtgttc
gatctcgatcccggcgaaggcgtcagctgggcacaggtgaaagccggtgcacgcgatgtg
cgtgaccgcctgcagcaggtgggcctgaagagcttcgtacgcctgtccggtggtaagggc
gtgcacgtggtggtgccgatgcagcccaaggcaggctgggacgaggcgaaggcgttctgc
gaggcgttcgcgcaggcaatggcgctggagcagcctgatcgctacgtggcgacgatgagc
aaggcaaagcgcaatggcgtcatcttcatcgactggctgcgcaatacgcggggggccacc
agcgtctgttcgtggtcgctgcgcgcgcgcgatggtgcgggcgtggcggtgccgctgcgc
tgggaagagctggcccgggtgagcgcggctgacgcgtttccgatggccaaggcgctggcg
cgtgccaagcggctgaagggtgacccatggcagggcattgaacggttgaagcagacgctg
ccgtcgctgaagcggtag
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