Staphylococcus muscae: C7J88_07860
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Entry
C7J88_07860 CDS
T06215
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smus
Staphylococcus muscae
Pathway
smus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7J88_07860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smus03400
]
C7J88_07860 (mfd)
Enzymes [BR:
smus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7J88_07860 (mfd)
DNA repair and recombination proteins [BR:
smus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7J88_07860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
IstB_IS21
RecG_dom3_C
Glyco_hydro_115
ENTH
Motif
Other DBs
NCBI-ProteinID:
AVQ34092
UniProt:
A0A240BT60
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All DBs
Position
1614106..1617630
Genome browser
AA seq
1174 aa
AA seq
DB search
MKPIINEIIHRDTQFQNLKEYVGNRNVLVTGLTASAKAAMIAEVYQSGHEQVLLVTNNLY
QADKLEADLLQFVPDDELYKYPVQDMMTEEFSTQSPEFMSERVRTLTALAHERRGLFVIP
LNGLKKLLTPKALWQSHQMVLNIGDDLDLDTFLTKLVSMGYRRESVVTNIGDFSVRGGII
DIYPLLGEPVRIELFDTEVDSMRLFDVETQRSLENIDSIEITTAHDFIMTEEVREHTVHQ
LTAAYEQTRPKIEKSFRQDLKDTYDAFHITDEERFDPQVLRRLIAFMYDKSETLMDYFKD
NAVVLVDEYQRVKETEDTLTAETTDFLQNLVESGKGFLGQRFMDEDAFETLIRQRQIMYF
TLFTSSMPVKLDEIFKFSCKPVQQYYGQYDIMTSELQRFMRQDYRIVIVAETETKKERIQ
AMLSEMHVPTLLDPDIEAMLPGHAAIVEGSLSEGFELPYMSLVVITERELFKSRQKKTSK
KRRKTLTNAEKIKSYQELNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYMKIQYKGTDQL
FVPVDQMDQVQKYVGSEDKTPKLYKLGGSEWKKTKAKVQSNVEDIADELIALYKEREQSV
GFQFAPDTEEQHVFEMDFPYELTEDQDKSIREIKADMESARPMDRLLCGDVGYGKTEVAV
RAAFKAVMSGKQVAFLVPTTILAQQHYETLIERMRDFPVEIQLMSRFRTAKEIKATKEGL
KSGFVDIVVGTHKLLGKTIEYKDLGLLIVDEEQRFGVRHKEKIKALKANVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNANFIKEALERELSREGQAFYLYNKV
QSIYEKREQLRMLMPEAEIGVAHGQLTERDLEETMLNFINGEYDILLTTTIIETGVDVPN
ANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPQNKVLTETAEDRLQAIKEFTEL
GSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGYDLYAQMLEEAVNEKRGVKVETQAPELE
MDLRLDAYLPASYIQNEQAKIEIYKKLRATETHAQLMDIKDELLDRFNEYPQEVAHLLDS
VEIKTYLLQVGVQHVKDTGKVVEVLLTQAGTNRINGEELFRQSEPLGRSMTLGVKDGCMK
VTLKKGNQWLESLKFLAKILAESLRLEDEIESGI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccaatcatcaacgagattattcatagagatacacagtttcaaaatttaaaggaa
tatgttggcaatcgtaatgtgttagtcacaggcttaacggcttcagctaaagcagcgatg
attgcggaagtctatcaatcgggtcacgaacaagttttattagtgacaaacaacttatat
caagcggacaagttagaagcagacttattacaatttgtaccagatgatgagttatacaag
tatccagtacaagacatgatgacagaagaattttcaacacaaagcccagagtttatgagt
gagcgtgttcgtactttgacggcacttgcacatgaacgtcgtgggttatttgtcatcccg
ttgaatggattgaaaaagcttcttacaccgaaagcgttatggcaatctcatcagatggtt
ttgaatattggtgatgatttagatctcgacacctttttaacaaagcttgtcagtatgggg
tatcgtcgagaatctgttgtaacgaacattggtgatttttccgtacgtggtggtattatc
gacatttatccattgcttggagagcccgtgcgtattgaattgtttgatacagaagtggac
tctatgcgcttatttgatgttgagacgcaacgctcacttgaaaatatcgactcaattgaa
attacgacggctcatgactttattatgacggaagaagtgagagaacatacggtacatcag
ttgacggctgcgtatgaacaaacacgaccaaaaattgaaaaatcattccgtcaagatttg
aaagatacgtatgatgcctttcatattacggatgaagaacgctttgatccacaagtttta
agacgattgattgcatttatgtatgataagtctgaaacattgatggattattttaaagac
aatgcggttgtgttagttgatgaataccaacgggtaaaagaaactgaagatacattgact
gccgaaacgacagattttttacagaacttagtagaaagtgggaaaggttttctcgggcag
cgcttcatggatgaagatgcttttgaaacacttattcgtcagcgtcaaattatgtatttt
acattgtttacgtcatcgatgcctgtgaagttagatgagattttcaagttttcatgtaag
ccggttcaacaatattatggtcagtacgatattatgacgtcggaacttcaacgatttatg
cgtcaagattatcgcattgtgattgttgcggagacagagacgaaaaaagaacgcattcaa
gcgatgttaagtgaaatgcatgttcctacattgctagatccagatattgaagcgatgttg
ccaggtcatgcagcaattgtagaaggtagtttgtcggaaggcttcgaattaccatacatg
tctctcgtcgttatcacggagcgagaattgttcaagtcaagacagaagaaaacgtctaaa
aaacgtcgtaaaacattgacaaatgctgagaaaatcaaatcataccaagaattgaatgta
ggtgactatgtcgttcatgtacatcatggtgtcggacgttatcttggtgtagagacactt
gaagtgggtgacgtacatcgtgattacatgaagattcaatacaaagggacggatcagtta
tttgtccctgtcgatcagatggaccaagtacaaaaatatgttgggtcagaagataaaacg
ccgaagctttataagttaggcggtagtgaatggaagaaaacaaaagcaaaagtacaaagt
aacgttgaagatattgcagatgagttgattgcattatacaaagagcgtgagcaatctgtc
ggttttcagtttgcacctgatactgaagagcaacatgtttttgaaatggacttcccatac
gaattaacggaagatcaagataagtcaattcgtgagattaaggccgatatggaaagtgca
cgcccaatggatcgtctactctgcggtgatgttggttacggtaagacagaagtcgccgtc
cgtgccgcatttaaagcagtcatgtcaggtaaacaagttgcgtttctcgtaccaacaacg
atactggcacaacaacactacgaaacactgattgaacgtatgcgtgatttcccagttgag
attcagttgatgagccgttttcgtacggcgaaagaaatcaaagcaacgaaggaaggttta
aaatctggtttcgttgatattgttgtcggaacgcacaagttgttaggaaagacaatcgaa
tacaaagacttgggcttgttaattgttgatgaggaacagcgtttcggtgtgcgccacaaa
gagaaaattaaggcgctcaaagcaaatgttgatgtcctaacgctgacagcaacgccgata
ccgagaacattgcatatgagtatgctaggtgtgcgtgacttatcagtgattgaaacacca
cctgaaaatcgcttccctgttcagacatatgtcttggagcaaaatgcgaactttataaaa
gaagcattggaacgtgaattatctcgagaagggcaagcgttctacttgtacaacaaagtc
caatccatctatgagaagcgtgaacagttacgcatgttaatgccggaagccgagattggt
gtagcgcatggacagttaacggaacgagatcttgaagaaacgatgctcaactttatcaat
ggtgaatacgacattcttctcacaacgacgattattgaaacgggtgtggatgtgccaaat
gcaaacacattgattattgaagaagcggatcgttttggtttgagtcagttgtatcaatta
cgtggacgtgtagggcgttcaagtcgtattggatatgcctatttcttacatcctcaaaat
aaagtattaacggaaacagcggaagatcgtctacaagcgattaaagaatttacagagctc
ggtagtggctttaaaattgcaatgcgtgacttaaatattcgtggtgcaggaaacttacta
ggcaagcaacaacacggctttatcgattctgtcggttatgatctctatgcgcaaatgcta
gaagaagcggttaatgaaaaacgtggtgtcaaagtcgaaacgcaagctccagaacttgaa
atggatttacgattagatgcttacttacctgcatcatatattcaaaatgaacaagctaaa
attgaaatttataaaaaactacgtgcgactgagacgcatgcacaattaatggatattaaa
gatgaattgctagatcgctttaatgaatatccacaagaagtcgcgcatttgttagattct
gtggaaattaaaacgtatttattacaagtcggtgtgcaacatgtaaaggatacaggtaaa
gtggtggaagtgttgctgacacaagctggtacgaatcgaatcaatggcgaagaattattc
cgacaatctgaaccacttggacgcagtatgacacttggtgtaaaagatggttgtatgaaa
gtaacattgaaaaaaggcaatcaatggttggaatccctgaagtttttagcgaaaattcta
gcagaaagtttgaggttagaagatgaaatcgaaagcggcatttaa
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