Sinorhizobium meliloti SM11: SM11_chr0865
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Entry
SM11_chr0865 CDS
T01885
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SM11_chr0865 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smx03021
]
SM11_chr0865 (rpoD)
Transcription machinery [BR:
smx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SM11_chr0865 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF3106
Relaxase_C
Imm3
DUF4351
Motif
Other DBs
NCBI-ProteinID:
AEH78143
UniProt:
F7X1G7
LinkDB
All DBs
Position
904384..906438
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AA seq
684 aa
AA seq
DB search
MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRD
ELNEGQTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKVRRTRTAANDDD
ITNVGGEGQAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQDQQVEA
RLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRLLR
LAESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNLAT
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaagtcaaagaaaacgaagaagccgacgttgaacgtgaaggtgcaccggac
ggtccgcttctcgatctttccgacgatgctgtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgaccatggacgagctcaactccgttctgccctccgaagaagtgacttcc
gagcagatcgaagatacgatgtccatgctttccgacatgggcatcaacgtcatcgaggac
gaggaagccgaggaggctgccgccagcgacgacgatgacggcgccgacgagggcgaaagc
gaaggcggcgaactcgcgcctgctagcggcaccgcacttgcagccagcaagaagaaggag
ccgaccgatcgcaccgacgatccggtgcgcatgtatctgcgcgagatgggctccgtggag
cttctctcgcgcgaaggcgaaatcgccatcgccaagcgtatcgaggccggccgcgaaacg
atgattgccgggctctgtgagagcccgcttaccttccaggcgttgatcatctggcgcgac
gagttgaacgagggccagacgctgctgcgcgagatcatcgatctcgagacgacctattcc
ggccccgaggcaaaggctgcaccgcagttccagagcccggaaaagatcgaagccgaccgc
aaggcggcggaagagaaggaaaaggtccgcaggacccgaactgcggcgaacgacgacgac
atcaccaatgtcggcggcgaaggccaggcacccgaggaagaggaggaggacgacgacgag
tcgaacctctcgctcgccgcgatggaagcggaactgcgcccgcaggtgatggagacgctc
gacgtcatcgccgaaacctacaagaagctccgcaagctgcaggaccagcaggtggaagcg
cgccttgccgcgaccggcactctgtcgccggcgcaggagcgccgctacaaggagctgaag
gacgagctgatcaaggccgtgaagtcgctgtcgctcaaccagaaccgcatcgacgccctg
gttgagcagctctacgacatctccaagcgcctgacgcagaacgagggccgcctcctgcgc
ctggccgaatcctatggcgtcaagcgtgaggcgttcctggagcagtattccggcgccgag
ctcgatccgaactggatgaagtcgatcagcaatctcgccggcaaaggctggaaggagttt
gccagggccgagaaccagacgatccgcgacatccgccaggagatccagaaccttgcgacg
gagaccggcatttccatcgccgagtttcgccgcatcgtatccatggtgcagaagggcgag
cgtgaagcgcgtatcgccaagaaggagatggtcgaggccaaccttcgtctggtgatctcg
attgccaagaagtacacgaaccgcggtctgcagttcctcgatctgatccaggaaggcaac
atcggtctcatgaaggcggtcgacaagttcgagtatcgccgcggctacaagttctcgacc
tatgccacatggtggatccggcaggcgatcacccgttcgatcgccgaccaggcccgcacg
atccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgccag
atgctgcacgagatcggccgcgagccgacgcccgaggaactggcggaaaagctcgcaatg
ccgctcgagaaggtgcgcaaggtcctgaagatcgccaaggagccgatctcgctcgaaacg
ccggtcggcgacgaggaagattcgcatctcggggatttcatcgaggacaagaatgcgttg
ttgccgatcgatgcggccattcaggcgaatctgcgcgagacgaccacgcgcgtgctcgcc
tcgctcacgccccgcgaggagcgcgtgctgcgcatgcgtttcggcatcggcatgaacacc
gaccatacgctggaagaagtcggccagcagttctcggttacccgcgaacgcatccggcag
atcgaagcgaaggcgctgcgcaagctcaagcatccaagccgttcgcgcaagttgcgctcg
ttcctggacagctga
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integrated database retrieval system
