Sinorhizobium meliloti SM11: SM11_chr2371
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Entry
SM11_chr2371 CDS
T01885
Symbol
ligD
Name
(GenBank) DNA polymerase LigD ligase region
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SM11_chr2371 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smx03400
]
SM11_chr2371 (ligD)
Enzymes [BR:
smx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SM11_chr2371 (ligD)
DNA repair and recombination proteins [BR:
smx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SM11_chr2371 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AEH79625
UniProt:
F7X3M8
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All DBs
Position
complement(2353292..2354329)
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AA seq
345 aa
AA seq
DB search
MFSKPKESIRLFAGLCVNGLMAKASSKKPRDTAPIDPMPARVDPCLATLVAKPPKGSDWA
HEVKWDGYRIAVHIEPGRVRILTRGGYDWTDRFPSIADDARRLAVKTAILDGEAVVLNDQ
GRSDFGMLQRALGRLPSAVEAGVIVFYAFDVLYLDGRDVRRLPLRERRRLLEPLVAGREG
AIRLSEEVQADGDEFFRVACAHGLEGIIAKHIDKPYRSGRGEWWQKITCKRRDSFVIVGF
EPSTVPGHLGRLLLAAHQGDELVYVGGCGTGWSHDLSRELRKLLEGMVTKKPAVALRRKG
AVFVEPLLVADVEYRAWTDDGKLRHASFKGVRERADDATVLRIDG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgttctctaagccgaaagagtcaattcggcttttcgcgggcctgtgcgttaatggcctg
atggccaaagcatcctcaaagaagccccgcgataccgctccaatcgatcccatgccggcg
cgtgtcgatccctgccttgctacgctggtcgccaagccgccgaaagggtcggactgggcc
cacgaagtgaaatgggacgggtaccggattgccgttcacattgagcccggccgggtgcgg
atactcacgcgcggcggctacgattggaccgatcgctttccgtcgatcgccgatgacgcg
cggcgccttgccgtcaagacagctatcctcgacggggaggcggttgttctgaacgatcag
ggccgctcggatttcggcatgctgcaacgggctctcgggcgcttgccgtcagcagtcgaa
gccggtgtgatcgtcttctacgcctttgacgttctttacctcgatggccgcgacgtgcgc
cgtctgccgctgcgcgagcgccggcgattgctcgaaccgctcgtcgccggacgcgagggg
gcaattcggctctcggaagaagttcaggcggatggcgacgagttcttccgcgtcgcctgc
gcgcacgggctggaaggcatcatcgccaagcacatagacaagccctaccgctccggccgg
ggcgagtggtggcagaagatcacctgcaagcgccgggacagcttcgtgatcgtcggcttt
gagccgtcgaccgtgcctggtcatctcggtcggctgctgctggccgcgcatcagggcgac
gaactcgtctatgttggcggctgcggtactggctggtcacacgacctgtcgcgcgagctc
cggaagctgctcgaggggatggtgacgaaaaagccggcagtcgccctgaggcgaaaaggc
gccgtcttcgtcgagccgctgctcgtcgccgacgtcgagtatcgcgcctggaccgatgac
ggcaagctgcggcacgcgtcgttcaaaggagtcagggaacgggcagacgatgcgaccgta
ttgaggattgacggctaa
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