Sinorhizobium meliloti SM11: SM11_pC1481
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Entry
SM11_pC1481 CDS
T01885
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SM11_pC1481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smx03400
]
SM11_pC1481
Enzymes [BR:
smx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SM11_pC1481
DNA repair and recombination proteins [BR:
smx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SM11_pC1481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
AEH82554
UniProt:
F7XBW7
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All DBs
Position
pSmeSM11c:1379500..1380444
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AA seq
314 aa
AA seq
DB search
MSRRAKPLLQDDSVAKSKPARPRDPAQPNLPFDPMPERIEPCLALLKPVPPKGPDWVFEV
KWDGYRLAIHIEPKGVRIITRGGHDWTHHFPAIAEATSKLGVGTAILDGEAVVLDEEGRS
DFGALQRSLGGRGGKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGPTGAIQ
SSEEVFGDGALLEKACSMGLEGIIAKHRDRPYRSGRTGDWLKIKCLQSESFMIVGYEQSL
TARGGLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEYLRKTLDRLKTSKPAVPLKGKNLVF
AQPTLIAEIEFRGP
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcgtgccaaacctttgctgcaggacgattccgtcgccaagtccaaaccggcc
cggccgcgcgatccggcacaacccaatcttccgttcgacccgatgcccgagcgcatcgag
ccgtgcctggcgctcctgaagccggtcccgccgaaaggcccggattgggtgttcgaggtg
aagtgggacggctatcgcctggcaatccatatcgagccgaaaggtgtcaggatcatcact
cgcggcggtcacgactggacgcatcatttcccggcaatcgccgaggccaccagcaagctc
ggtgtcgggaccgcgatcctcgatggcgaggccgtcgtgctcgatgaggaaggacggtcc
gatttcggggcgctgcagcgctcgctcggcggacgcggtggcaagcgttcgtcgacggag
tcggtgtttttcgctttcgacctgctctatttcgatggccacgacctgtcgggcaccgaa
ctctccgtgcgccggcatctgcttgagggctttctcgacggccccactggcgcgatccag
tcgtccgaggaagtgttcggggatggcgcacttctcgagaaggcttgctccatgggcctc
gaggggatcatcgccaagcatcgggatcggccctatcgctccggccgcaccggcgactgg
ctgaagataaaatgcctccagagcgaaagcttcatgatcgtcggctacgagcaatcgctg
accgcccgcggagggcttggcagcctgcttctcgccggtcgcaaaggacatgactggatt
tacgttggctccgtcggaaccgggtttaatacgaaggatgccgagtatttgcgcaagacg
ctcgaccggctgaagacaagtaaaccggccgtgccgctcaagggcaagaacctggtgttc
gcccagccgaccttgatcgcggagatcgagtttcgtggcccatga
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integrated database retrieval system
