Stackebrandtia nassauensis: Snas_2802
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Entry
Snas_2802 CDS
T01194
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Snas_2802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_2802
Enzymes [BR:
sna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Snas_2802
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Snas_2802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADD42478
UniProt:
D3Q8A4
LinkDB
All DBs
Position
complement(2950476..2951384)
Genome browser
AA seq
302 aa
AA seq
DB search
MAREHRTITVDGYDIEVTNPEKVMYPDSRFTKQDVVDYYLKVASVLLPHIRNRPLTRIRF
PDGTGGESFFEKNAQKYTPSWIRTETVATPGSTKGRASVDYIVAEKPATLAWLANQAALE
LHVPQWRFDGHEASDRPDRLVADLDPGKGAGLRECVEVAQLLRERFEADGLTVYVKASGK
SGVHLCCPIAGSQGDDVVSGYAKAVANDLAAEKPKLVTAKMAKAEREGRVFIDWSQNNAA
KTTVAPYSLRNRAEATVSAPLTWEELDSDKLTPPGPDEVLERVAEQGDLWADVLKKGPKV
PG
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtgagcacaggacgatcaccgtggacggttacgacatcgaggtgaccaatccc
gaaaaggtgatgtatcccgacagtcggttcaccaaacaggacgtcgtcgactattacctg
aaggtcgcctcggttttgttgccgcacatcaggaatcggccgttgacgcggatccggttc
cccgatgggaccgggggtgagtcgttcttcgagaagaacgctcagaagtacacgccgagt
tggattcggaccgagacggttgccacgccgggttcgacgaaggggcgggcttcggttgac
tacatcgtggccgagaagcccgcgacgttggcttggctcgcgaatcaggccgcgttggag
ttgcatgttccgcagtggcggttcgacgggcatgaggcgagtgatcggcccgatcggttg
gttgccgatttggatccggggaagggggctgggttgcgcgagtgtgtggaggtggcgcag
ctgttgcgggagcggtttgaggccgacgggttgaccgtgtacgtgaaggcgtcggggaag
agtggggtgcacctgtgctgtcccatcgcgggcagtcagggcgatgacgtggtgtcgggg
tacgccaaggcggtggccaatgatctggcggctgagaagccgaagttggtgaccgcgaag
atggccaaggccgagcgtgaggggcgggtgttcatcgactggagccagaacaacgccgcg
aagacgacggtcgccccgtattcgttgcgcaatcgggccgaggctacggtttcggcgccg
ttgacgtgggaggagctggactccgacaagctgacgccgcccgggcccgacgaggtgctg
gagcgggtggccgagcagggtgacctgtgggccgacgtgttgaagaaggggccgaaggtg
cccggctag
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