Stackebrandtia nassauensis: Snas_2814
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Entry
Snas_2814 CDS
T01194
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Snas_2814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_2814
Enzymes [BR:
sna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Snas_2814
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Snas_2814
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADD42490
UniProt:
D3Q8B6
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All DBs
Position
2960142..2961218
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AA seq
358 aa
AA seq
DB search
MLPTPGTLPEGPGWGFEFKWDGMRTLIATADGRARMIARGGGDYASAFPDLADIADQLPE
GVIDAEIIALDASARPSFSRVAKRFSNRHPPPDLVRSVPVNLMIFDLLRLGDAEVVGQPY
WRRREVLDALELVGERWLVPPWHDDGAGTLAAALDAGLEGVVAKRLDSRYVAGRSRDWVK
VKAVDTGDVVVGGWRTAIRSLLVGTPNAAGTLTYRGRVGSGLTDAELGRFRAELAPSDAC
PFDPPPPGDHARDAIWTAPVAVVEVAFSHLTRSGLMRHPRYVRARPDKTAADIDPAAMDP
GASDSGPIDPRAIDPGASDSSTIAPAAIDRSSTDAIASDPDAIGSGLIEPDGDETGES
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccactccggggacgcttccggaagggccggggtgggggttcgagttcaagtgg
gacggcatgcgcaccctcatcgcgaccgccgacggccgggcccggatgatcgcgcgcggc
gggggcgactacgccagcgccttccccgacctggccgacatcgcggaccagctgcccgag
ggggtcatcgacgccgagatcatcgcgctggacgctagtgcccggccgtcgttctcgcgg
gtggccaaacggttctccaatcgccatccccctcccgacctggtccggtcggtgccggtg
aacctgatgatcttcgacctgctgcggctgggggacgcggaggttgtggggcagccgtac
tggcggcgccgcgaggtcctggacgccctggagctggtgggggagcggtggctggtgccg
ccgtggcacgacgatggcgcggggacgctggccgccgcgctggacgcggggctggagggg
gttgtcgccaagcggttggactcccggtacgtcgcggggcgcagccgcgactgggtgaag
gtcaaggccgtggacaccggtgacgtggtggtgggcggctggcgaaccgcgatccgctcg
ctgctggtgggcaccccgaacgcggcggggaccttgacgtatcgcggccgcgtcggttcg
ggcctgaccgacgccgagctgggacgcttccgcgcggagctggccccgtccgacgcctgc
cccttcgatccgcccccgccgggagaccacgctcgcgacgcgatctggaccgccccggtc
gcggtcgtcgaggtcgcgttctcgcacctgacccgctcggggctgatgcgccacccccga
tacgtgcgcgcccggcccgacaaaaccgccgccgacatcgacccggccgcgatggatcct
ggcgcaagcgattccggcccgatcgacccgcgcgcgatcgatcctggcgcaagcgattcc
agcacgatcgccccggccgcgatcgatcgcagctcgactgatgccatcgcgagcgaccct
gacgcaatcggttccggcttgatcgagcccgacggcgacgagacgggagagtcgtga
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