Stackebrandtia nassauensis: Snas_2815
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Entry
Snas_2815 CDS
T01194
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Snas_2815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_2815
Enzymes [BR:
sna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Snas_2815
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Snas_2815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADD42491
UniProt:
D3Q8B7
LinkDB
All DBs
Position
2961218..2962135
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AA seq
305 aa
AA seq
DB search
MAPVSQRVRFGDRELTVSHLDKLMYPETGTTKADVIDYYARAAAVLLPHITGRILTRVRY
PHGTGDVRFFEKHAPPAVPPWLRTATVPSKTHADGVTYVVADEPAALVWLANLYTIELHT
PQWQLDDTAPDSTRRPDRLVIDLDPGEGAGITECVHIAHLVRERLEADGLIAYPKTSGKN
GVHLVVPISGTQPAEQVIDYAKALARSLAAAHPRLVTATMGPRNRIGKVLIDWSQNNPAK
TTVAAYSLRGQPRPVISTPITWSELDAGNTGPFGPEAVLGRVATLGDLHADVTTPGPPLP
VAAGR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggtttcgcagcgggtccgcttcggcgaccgggagctgaccgtgtcgcacctc
gacaaattgatgtaccccgagaccggcaccaccaaggccgacgtaatcgattactacgcg
cgcgccgccgccgtcctgctgccccacatcaccggccgcatcctcacccgggtgcggtac
ccgcacggcaccggcgacgtccggtttttcgagaagcatgccccgcccgccgtccccccg
tggttgcgcaccgccaccgtccccagcaagacccacgccgatggcgtcacctacgtcgtc
gccgacgaacccgccgcgctcgtgtggctggcgaacctgtacaccatcgagcttcacact
ccacaatggcagctcgacgacaccgccccggacagcacccgccgtcccgaccggctcgtc
atcgacctcgaccccggcgagggcgccggaatcaccgagtgcgtccacatcgctcacctg
gtgcgggagcggctcgaagccgacggcctgatcgcctaccccaagacctcgggcaagaac
ggcgtgcacctggtggtgcccatcagcggcacccaaccggccgagcaggtcatcgattac
gccaaggctctcgcccgtagcctggccgcagcccatccccgtctcgtcaccgccaccatg
gggccgcgcaaccggatcggcaaggtcctcatcgactggagccagaacaatccggccaag
acgaccgtcgccgcgtactcgctgcgtggccagccccgtccggtgatttcgacccccatc
acatggtccgaactggacgccgggaacaccggccccttcggccccgaagcggtgctggga
cgggttgccaccctgggcgacctgcacgccgacgtcaccacgcccgggccgccgctgccc
gtcgccgctgggcggtga
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