Streptomyces nigrescens: HEK616_22950
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Entry
HEK616_22950 CDS
T08756
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HEK616_22950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_22950
Enzymes [BR:
snig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HEK616_22950
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HEK616_22950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDM68808
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All DBs
Position
2566485..2567486
Genome browser
AA seq
333 aa
AA seq
DB search
MEATDRDTDTGGKQTGRGGATGKAAGRARKGGTKTVRAGGRTVEVHRPDKVLFPDDGLTK
ADVVDYYRRVAAAMVPHLRDRPLMLERLPEGLDGPHFMQKETPDHYPDWIRREEVAKEGG
TVTHPVCDDKATLLYLADQACLTLHRWLSRAGRPDHPDRLVFDLDPPGSGFEPVREAARQ
LVGLLDELGLPTMLMTTGSRGLHVIVPLDGRGDFDTVRGFAQDVAEVLAGRHPDRLTTAV
RKKARGDRLYLDVQRNAYAQTAVAPWSLRAKPGAPVAVPIRHEQLDDPELTARSWSLKDV
AGVVEQARARPWSAVPARGRSLRAARKRLDALR
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccgacagggacacggacaccggcgggaagcagaccggccggggcggcgcc
accgggaaggccgccggcagggcccgcaagggcggtacgaagaccgtgcgggcgggcggc
cggaccgtggaggtgcaccgcccggacaaggtgctgttcccggacgacgggctgaccaag
gccgatgtcgtcgactactaccgccgggtggccgcggccatggtcccgcacctgcgggac
cgcccactgatgctggaacggctcccggaagggctggacgggccgcacttcatgcagaag
gagaccccggaccactaccccgactggatccgccgcgaggaggtcgccaaggagggcggc
accgtcacccaccccgtctgcgacgacaaggccaccctgctctacctcgccgaccaggcc
tgtctcacgctgcaccgctggctgtcccgggccggccggcccgaccacccggaccggctg
gtgttcgacctcgacccgccgggctccggcttcgagcccgtacgggaggccgcgcggcaa
ctcgtcgggctgctggacgaactcgggctgccgaccatgctgatgaccaccggttcgcgc
gggctgcacgtcatcgtcccgctggacggccgcggcgacttcgacaccgtgcgcggcttc
gcccaggacgtggcggaggtgctggccgggcgccatccggaccggctcaccacggccgtg
cgcaagaaggcccgcggcgaccggctctacctggacgtccagcgcaacgcctacgcgcag
acggccgtcgccccctggtcgctacgggccaagcccggcgccccggtcgccgtgccgatc
cgccacgagcagctcgacgaccccgaactgaccgcacgcagctggtcgttgaaggacgtg
gcgggggtcgtggagcaggcccgggcccggccgtggtcggcggtgccggcccgcgggcgg
tcgctgcgcgcggcccgcaagcggctcgacgccctgcgctga
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