Sphingomonas sp. NIC1: A7E77_04765
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Entry
A7E77_04765 CDS
T04479
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A7E77_04765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_04765
Enzymes [BR:
snj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A7E77_04765
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A7E77_04765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANC86253
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All DBs
Position
989516..992020
Genome browser
AA seq
834 aa
AA seq
DB search
MPETDPLARYNAKRDFAKTAEPAGTLAPGNGNSFIVQKHDATRLHWDFRLEADGVLKSWA
VTRGPSLDPDEKRLAVRTEDHPLSYATFEGTIPEGEYGGGTVMLWDRGTWAPVAGKSAKD
IEKGHLHFVLDGERMKGEWLLIRLKPRGKEKRENWLLRKIDDAHAGGTDTLVEEGLTSVA
TGRTMAEIADGKSSPASHGRGTARAAGGGGAAPRATRAKKGKKAKLPAFQNPQLCTLVDS
VPAGAGWVHEMKYDGYRALVAVADGTAKVYTRNGLDWTDRFGGIAEAAAALPVSSALIDG
EIVAFKDGKPDFSTLKDAIGAGGAMTLFAFDLLSLDGEDLTGLTTVERKERLRGIVGDDG
RLQFSEHVLGSGEQLFDAMCREGMEGVVSKRADAPYTGGRNRTWLKAKCTRRQEFVILGW
VPSDKRRGFKSLLLGVREGAGKAGSWRYTGKVGTGFDTATMDDLAERLATLKTDAPPVDA
TALKPFRAAIRGARWVRPELVAEIAFAETTPDGLLRHASFLGLRCDKPADTVVVEVPEPA
PDQGDTPAIHVKVSNRDRVIFPESNVTKSELADYYAALSPIMLPWVARRPLSLVRCPQGR
AKQCFFQKHDAGSFGEHVHHVDVREKDGSVEPYLYVDSADGLVACVQMGGIEFHGWGSHV
DAIEMPDRLVIDLDPDEGLGFADTKAAADHVRAQLAEIGLVSFPLLSGGKGVHVVVPLTP
QAEWPAVKDFADRFARALAAAEPDRFVAVATKAKRKGRIFIDYLRNQRGSTAIMPYSARA
RAGAPVSAPVSWTELRDIDTAARWTVRDANELLKRATSRALAGWGVADQVLPDV
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagacggacccgctcgcccgctacaacgccaagcgcgatttcgcgaagacggcg
gagccggcgggtacgctcgcgcccggcaacggcaacagcttcatcgtccagaagcatgac
gccacccgcctccattgggacttccgcctcgaagcggacggcgtcctcaaaagctgggcg
gtgacgcgcggccccagcctcgatcccgacgaaaagcggctcgcggtgcggaccgaggac
catcctttgtcgtatgcgacgttcgaaggaacgatccccgaaggggaatatggtggcggc
acggtgatgctgtgggaccgcggaacctgggcgccagtcgcgggcaagtccgccaaggac
attgagaagggccatctccacttcgtcctcgatggcgagcggatgaagggcgaatggctg
ctgatccgcctgaaaccgcgcggcaaggaaaagcgcgagaattggctgttgcgtaagatc
gacgacgctcacgccggcgggacggacacgttggtcgaggaaggcctcaccagcgtcgca
accggccgcacgatggcggagatcgccgacggtaagtcctcccctgcttcgcatgggagg
ggaaccgcccgcgcagcgggtggtggaggggcagccccgcgcgcgacgcgtgcgaaaaag
ggcaagaaggccaaactccccgccttccagaacccccaactctgcaccttggtcgacagc
gtgcccgccggcgccggctgggtgcacgagatgaaatacgacggctatcgcgccctcgtc
gcggtcgcggatggaacagccaaggtctacacccgcaacggcctcgactggacggacaga
tttggggggatagcagaagctgccgccgccctccccgtgtcctccgcgctgatcgacggc
gagatcgtcgcgttcaaggatggcaagcccgatttctcgacgctgaaggacgcgatcggt
gcgggcggcgcgatgacgctgtttgccttcgatctgctgtcgctcgacggcgaggatttg
accggcctgacgacggtggagcgcaaggagcggctgcgcggcatcgtcggcgacgacgga
cggctgcaattctccgaacacgtcttgggctcgggcgagcaattgttcgatgcgatgtgt
cgcgaggggatggaaggcgtcgtgtcgaaacgcgccgatgcgccctataccggcggccgc
aaccggacgtggttgaaggcgaaatgcacgcgacgccaggaattcgtcatcctcggctgg
gtgccgtccgacaagcggcggggcttcaagtcactgctgctgggcgtgcgcgaaggcgct
ggcaaggcagggagctggcgctacaccggcaaggtcggcacgggcttcgataccgcgacg
atggacgatctggccgaacgccttgcgacgctcaagacggacgcaccaccggtcgacgcg
accgcgctgaagcccttccgggccgccatccgcggcgcgcgctgggttcgccccgaattg
gtcgcggagatcgcctttgccgaaacgacgcccgatggcctgctgcgccacgcgagcttc
ctgggcctgcgctgcgacaaacccgccgatacggtcgtcgtggaagtgcccgaacccgcc
cccgaccaaggggacacgccagcgatccacgtcaaggtcagcaatcgcgaccgcgtgatc
ttccccgaaagcaacgtcaccaagagcgagctcgccgattattacgcggcgctcagcccg
atcatgctgccctgggtcgcgcgccgcccgctcagcctggtccgttgtccgcaaggccgc
gccaaacaatgctttttccagaagcacgacgcgggcagcttcggcgaacacgtccaccat
gtcgacgtgcgcgaaaaggacggcagcgtcgagccctacctctacgtcgacagtgcggac
ggtctggtcgcctgcgtgcagatgggcggcatcgaatttcacggctgggggagccacgtc
gacgcgatcgagatgcccgaccgactggtgatcgatctcgaccccgacgagggcctgggc
ttcgcggacaccaaggcggccgccgatcacgtccgcgcgcagcttgccgagatcggcctc
gtcagcttcccgttgctgtcgggcggcaaaggcgtccatgtcgtcgtgccgctcacgccc
caggcggaatggcccgcggtgaaggacttcgccgaccgcttcgcgcgcgcgctggccgcg
gcggagccggaccgcttcgtcgcggttgcgaccaaggcgaagcggaagggccgcatcttc
atcgactatctgcgcaaccagcgtggcagcaccgcgatcatgccctattcggcgcgggcc
cgggccggcgcaccggtgtcggcgcccgtgtcgtggaccgagctgcgcgacatcgacacg
gcggcgcgctggaccgtccgcgacgcgaacgaactgctgaagcgcgcgacgtcgcgggcg
ctggccggctggggcgtggcggatcaggtgctgccggacgtgtga
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