KEGG   Starkeya novella: Snov_0819Help
Entry
Snov_0819         CDS       T01258                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sno  Starkeya novella
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sno00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Snov_0819
Enzymes [BR:sno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Snov_0819
DNA repair and recombination proteins [BR:sno03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Snov_0819
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
complement(846383..848911)
Genome map
AA seq 842 aa AA seqDB search
MGLETYRRKRDFNTTSEPKGRTSRRAGNLYLIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGEYGGGTVMLWDTGTWTPIGDAHVAYKKGH
LEFELDGEKLHGRWHLVRMHPRPREKKENWLLIKGEDEFARTEEQSDILEELPDSVKTGR
DLDAIAKDAPGWSSKTGRLRPAPKPKATPAKAKAASGGAAKRKTVAGAPLPDFIEPQLAT
LVDKAPSGTRWVHEIKFDGYRLEVRIEDGEVRLLTRTGLDWTARFGSRLVEAFKALPLSN
ALIDGELVVEGGNGASHFSTLQADLSEERTDRFLFYAFDLLFLDGEDLRSKPLVERKAAL
AKLLAGVPDPLRYSEHFDEDGDVMLRHACRLSLEGLVSKLADAPYRSGRSKDWRKSKCTE
RQEFVIGGYVPSTVSNHAIGSLVLGVYEAGKLGGKLRHVGRVGTGYTARVAADLWKQLQP
LARDKSPFAGKLAAEAARGVHFVEPTLVAEIEFRGWTGERNLRHASYRGLREDKPAAEVV
QEGAPEMNADRPPGSSVKLTHPDRIYWPEDGVTKQGLVDYYTQVWPKIAPFIVARPLALL
RCPDGIAEACFFQKHAWRGINKAVKLVPDPKDKGGEPLLTISDFDGLIALVQAGTLEIHP
WGAPLAGLEKPDMLIFDLDPGPGVGWPEVIAAAKEVRARLEADEMAAFVKTSGGKGLHVV
TPLSSKAGWAPAKEYAKAVADAMAADDPDRFISVATKAKRGGRIFVDYLRNARGATAVAP
YSSRARAGAAVSMPVTWAELDQLASAAQYTVDNAPTRLASLDADPWEDFRAAAKPLPAGK
KR
NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt
atgggcctggagacctaccgccgcaagcgcgacttcaacaccacttcggagccgaaaggg
cgcacttcccgccgcgcgggcaacctctacctgatccagaagcacgacgcccgccgcctg
cattacgacttccggctggagatggacggcgtgctgaagagctgggcggtgacgcgcggg
ccgagcctggtgcccggcgagaagcgcctcgccgtgcatgtcgaggaccacccgctcgat
tacggcagcttcgagggcaccatccccaagggcgaatatggcggcggcacggtgatgctg
tgggacaccggcacctggacgccgatcggcgatgcccatgtcgcctacaagaagggccat
ctcgaattcgagctcgacggcgagaagctgcacgggcgctggcatctcgtgcgcatgcat
ccgcggccgcgcgagaaaaaggagaactggctgctgatcaagggcgaggacgagttcgcc
cgtaccgaggagcagtccgacatcctcgaggagctgccggattcggtgaagaccggccgc
gacctcgacgccatcgccaaggacgcgccgggctggtcgtccaagaccggcaggctgcgg
ccggccccgaagcccaaggccacgcccgccaaggcgaaggcggcaagcggcggcgcggcg
aagcgcaaaaccgtcgccggcgccccacttcccgacttcatcgagccgcagctcgccacc
ctcgtcgacaaggcgccgagcggcacgcgctgggtgcatgagatcaagttcgacggctac
cggctggaggtgcggatcgaggatggcgaggtgcgcctgctaacccgcaccgggctcgac
tggacagcgcgcttcggctctcggctggtcgaggcgttcaaggcgctgcccctctcgaac
gcgctgatcgacggcgaactggtggtcgaaggcggcaacggcgcgtcgcatttctcgacg
ctgcaggccgacctttccgaggagcgcaccgaccgcttcctgttctacgccttcgacctc
ctgttcctcgacggcgaggacctgcgcagcaagccgctcgtcgagcgcaaggcggcgctc
gcgaagctgctcgccggcgtccccgacccgctgcgctacagcgagcatttcgacgaggat
ggcgacgtcatgctgcggcatgcctgccgcctgagcctcgaaggcctcgtctccaagctc
gccgacgcgccctaccgctccggccggtccaaggactggcgcaagtcgaaatgcaccgag
cggcaggaattcgtcattggcggctatgtgccctccaccgtctccaaccacgccatcggc
tcgctggttctgggcgtttacgaggccggcaaattgggcggcaaactgcgccatgtcggg
cgcgtcggcaccggctacacggcccgcgtcgccgccgacctgtggaagcagctccagcct
ttggcacgcgacaagagccccttcgccggcaagctcgccgccgaggccgcgcgcggcgtg
catttcgttgagccgacgctggtggcggagatcgagttccggggctggacgggcgagcgc
aatctgcgccacgcttcctatcgcggcctgcgcgaggacaagccggccgccgaggtggtt
caggaaggggcaccggagatgaacgcagatcgcccgcccggctcaagcgtcaagctcacc
catcccgaccgcatctactggccggaggacggcgtcaccaagcaggggctggtggattac
tacacgcaggtctggccgaagatcgctcccttcatcgtcgcccgcccgctcgcgctgctg
cgctgcccggacggcatcgcggaagcctgcttcttccagaagcacgcctggcgcggcatc
aacaaggcggtgaagctggtccccgaccccaaggacaagggcggcgagccgctgctcacc
atctccgatttcgacgggctgatcgcgctggtgcaggccggcacgctggagatccacccc
tggggcgcgccgctcgccgggctggagaagccggacatgctgatcttcgacctcgacccc
ggccccggcgtcggctggccggaggtgatcgccgccgccaaggaagtacgcgcccggctg
gaggcggacgagatggcggccttcgtgaagacctccggcggcaagggcctgcacgtcgtc
acgccgctcagctccaaggccggctgggcgccggccaaggagtacgcgaaggccgttgcc
gacgccatggcggccgacgatcccgaccgcttcatctcggtggcgaccaaggccaagcgc
ggcgggcgcatcttcgtcgactatctgcgcaatgcgcgcggggcaacggcggtagcgccc
tattccagccgtgcccgcgccggcgcggcggtgtcgatgccggtgacctgggcggagctc
gaccagctcgccagcgccgcgcaatacaccgtcgacaacgccccgacgcggctcgccagc
ctcgatgccgacccgtgggaggatttccgcgcggcggcgaagcccctgccggcggggaag
aagaggtag

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