Ancylobacter novellus: Snov_0819
Help
Entry
Snov_0819 CDS
T01258
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sno
Ancylobacter novellus
Pathway
sno03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Snov_0819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sno03400
]
Snov_0819
Enzymes [BR:
sno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Snov_0819
DNA repair and recombination proteins [BR:
sno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Snov_0819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADH88144
UniProt:
D7A5M0
LinkDB
All DBs
Position
complement(846383..848911)
Genome browser
AA seq
842 aa
AA seq
DB search
MGLETYRRKRDFNTTSEPKGRTSRRAGNLYLIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGEYGGGTVMLWDTGTWTPIGDAHVAYKKGH
LEFELDGEKLHGRWHLVRMHPRPREKKENWLLIKGEDEFARTEEQSDILEELPDSVKTGR
DLDAIAKDAPGWSSKTGRLRPAPKPKATPAKAKAASGGAAKRKTVAGAPLPDFIEPQLAT
LVDKAPSGTRWVHEIKFDGYRLEVRIEDGEVRLLTRTGLDWTARFGSRLVEAFKALPLSN
ALIDGELVVEGGNGASHFSTLQADLSEERTDRFLFYAFDLLFLDGEDLRSKPLVERKAAL
AKLLAGVPDPLRYSEHFDEDGDVMLRHACRLSLEGLVSKLADAPYRSGRSKDWRKSKCTE
RQEFVIGGYVPSTVSNHAIGSLVLGVYEAGKLGGKLRHVGRVGTGYTARVAADLWKQLQP
LARDKSPFAGKLAAEAARGVHFVEPTLVAEIEFRGWTGERNLRHASYRGLREDKPAAEVV
QEGAPEMNADRPPGSSVKLTHPDRIYWPEDGVTKQGLVDYYTQVWPKIAPFIVARPLALL
RCPDGIAEACFFQKHAWRGINKAVKLVPDPKDKGGEPLLTISDFDGLIALVQAGTLEIHP
WGAPLAGLEKPDMLIFDLDPGPGVGWPEVIAAAKEVRARLEADEMAAFVKTSGGKGLHVV
TPLSSKAGWAPAKEYAKAVADAMAADDPDRFISVATKAKRGGRIFVDYLRNARGATAVAP
YSSRARAGAAVSMPVTWAELDQLASAAQYTVDNAPTRLASLDADPWEDFRAAAKPLPAGK
KR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgggcctggagacctaccgccgcaagcgcgacttcaacaccacttcggagccgaaaggg
cgcacttcccgccgcgcgggcaacctctacctgatccagaagcacgacgcccgccgcctg
cattacgacttccggctggagatggacggcgtgctgaagagctgggcggtgacgcgcggg
ccgagcctggtgcccggcgagaagcgcctcgccgtgcatgtcgaggaccacccgctcgat
tacggcagcttcgagggcaccatccccaagggcgaatatggcggcggcacggtgatgctg
tgggacaccggcacctggacgccgatcggcgatgcccatgtcgcctacaagaagggccat
ctcgaattcgagctcgacggcgagaagctgcacgggcgctggcatctcgtgcgcatgcat
ccgcggccgcgcgagaaaaaggagaactggctgctgatcaagggcgaggacgagttcgcc
cgtaccgaggagcagtccgacatcctcgaggagctgccggattcggtgaagaccggccgc
gacctcgacgccatcgccaaggacgcgccgggctggtcgtccaagaccggcaggctgcgg
ccggccccgaagcccaaggccacgcccgccaaggcgaaggcggcaagcggcggcgcggcg
aagcgcaaaaccgtcgccggcgccccacttcccgacttcatcgagccgcagctcgccacc
ctcgtcgacaaggcgccgagcggcacgcgctgggtgcatgagatcaagttcgacggctac
cggctggaggtgcggatcgaggatggcgaggtgcgcctgctaacccgcaccgggctcgac
tggacagcgcgcttcggctctcggctggtcgaggcgttcaaggcgctgcccctctcgaac
gcgctgatcgacggcgaactggtggtcgaaggcggcaacggcgcgtcgcatttctcgacg
ctgcaggccgacctttccgaggagcgcaccgaccgcttcctgttctacgccttcgacctc
ctgttcctcgacggcgaggacctgcgcagcaagccgctcgtcgagcgcaaggcggcgctc
gcgaagctgctcgccggcgtccccgacccgctgcgctacagcgagcatttcgacgaggat
ggcgacgtcatgctgcggcatgcctgccgcctgagcctcgaaggcctcgtctccaagctc
gccgacgcgccctaccgctccggccggtccaaggactggcgcaagtcgaaatgcaccgag
cggcaggaattcgtcattggcggctatgtgccctccaccgtctccaaccacgccatcggc
tcgctggttctgggcgtttacgaggccggcaaattgggcggcaaactgcgccatgtcggg
cgcgtcggcaccggctacacggcccgcgtcgccgccgacctgtggaagcagctccagcct
ttggcacgcgacaagagccccttcgccggcaagctcgccgccgaggccgcgcgcggcgtg
catttcgttgagccgacgctggtggcggagatcgagttccggggctggacgggcgagcgc
aatctgcgccacgcttcctatcgcggcctgcgcgaggacaagccggccgccgaggtggtt
caggaaggggcaccggagatgaacgcagatcgcccgcccggctcaagcgtcaagctcacc
catcccgaccgcatctactggccggaggacggcgtcaccaagcaggggctggtggattac
tacacgcaggtctggccgaagatcgctcccttcatcgtcgcccgcccgctcgcgctgctg
cgctgcccggacggcatcgcggaagcctgcttcttccagaagcacgcctggcgcggcatc
aacaaggcggtgaagctggtccccgaccccaaggacaagggcggcgagccgctgctcacc
atctccgatttcgacgggctgatcgcgctggtgcaggccggcacgctggagatccacccc
tggggcgcgccgctcgccgggctggagaagccggacatgctgatcttcgacctcgacccc
ggccccggcgtcggctggccggaggtgatcgccgccgccaaggaagtacgcgcccggctg
gaggcggacgagatggcggccttcgtgaagacctccggcggcaagggcctgcacgtcgtc
acgccgctcagctccaaggccggctgggcgccggccaaggagtacgcgaaggccgttgcc
gacgccatggcggccgacgatcccgaccgcttcatctcggtggcgaccaaggccaagcgc
ggcgggcgcatcttcgtcgactatctgcgcaatgcgcgcggggcaacggcggtagcgccc
tattccagccgtgcccgcgccggcgcggcggtgtcgatgccggtgacctgggcggagctc
gaccagctcgccagcgccgcgcaatacaccgtcgacaacgccccgacgcggctcgccagc
ctcgatgccgacccgtgggaggatttccgcgcggcggcgaagcccctgccggcggggaag
aagaggtag
DBGET
integrated database retrieval system