Streptomyces nodosus: CP978_23605
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Entry
CP978_23605 CDS
T06839
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snq
Streptomyces nodosus
Pathway
snq03030
DNA replication
snq03410
Base excision repair
snq03420
Nucleotide excision repair
snq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP978_23605 (ligA)
03410 Base excision repair
CP978_23605 (ligA)
03420 Nucleotide excision repair
CP978_23605 (ligA)
03430 Mismatch repair
CP978_23605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snq03032
]
CP978_23605 (ligA)
03400 DNA repair and recombination proteins [BR:
snq03400
]
CP978_23605 (ligA)
Enzymes [BR:
snq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP978_23605 (ligA)
DNA replication proteins [BR:
snq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP978_23605 (ligA)
DNA repair and recombination proteins [BR:
snq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP978_23605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP978_23605 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP978_23605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP978_23605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QEV41141
UniProt:
A0A0B5DHF8
LinkDB
All DBs
Position
5222233..5224425
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPAEAREQHKQLAEQIEEHRFRYYVKNAPVVSDAEFDRLLRTLEALEDEY
PELRTPDSPTQKVAGAYETEFTAVEHRRRMLSLDNAFDDEELAAWADRVAKEVGTSAHHF
LCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRVPDLVEI
RGEVFFPMELFQELNARLVEGGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL
EGYESLTRLSETYDLLHSWGLPTAKYNRVVDDLDGVRAFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPSECPE
CGTPLRPMKEGDVDLRCPNARGCPAQLRERLFYLAGRKALDIEHFGYVAATALTRPLEPA
EPPLKDEGDLFDLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEPKKNAL
AMLENIAAAKERPLARVLTGLSIRHVGPVAAEALARAFRSIDRIDQATEEELRNTDGVGE
IVAQSVKEWFAEDWHRDILRKWKAAGVRMEEEGSAEDEGPRPLEGLTVVVTGTLERFTRD
GAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLEQGPDA
ASEVAVPAEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcgcgggagcagcacaag
cagctcgccgagcagatcgaggagcaccgcttccggtactacgtgaagaacgcacccgtg
gtcagcgacgccgagttcgaccggctgctgcgcactctggaggcgctggaggacgagtat
ccggagctgcgcacgcccgactcgccgacccagaaggtcgcgggggcgtacgagacggag
ttcaccgccgtcgagcaccgccggcgcatgctctcgctcgacaacgcgttcgacgacgag
gagctcgccgcctgggccgaccgcgtcgccaaggaggtcggcacctccgcccaccacttc
ctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctatgagcacggccgtctc
acccgcgccgcgacccggggcgacggccgcaccggtgaggacatcacccccaatgtgcgg
accatcgcggagatccccgaccgcctcaagggcgaccgggtccccgatctggtggagatc
cggggcgaggtcttcttcccgatggagctgttccaggagctgaacgcccgtctggtggag
ggcggggacaagccgttcgccaacccgcgcaacgcggccgcgggttcgctgcgtcagaag
gacccgcgcgtcaccgccacccgcccgctgcacatggtggtgcacgggatcggcgccctg
gagggctacgagagcctcacccggctctccgagacctacgatctgctgcactcctggggc
ctgcccaccgccaagtacaaccgggtggtcgacgacctcgacggcgtccgggcgttcatc
gcgtactacggcgagaaccgccactccgtggagcacgagatcgacggggtcgtggtcaag
ctcgacgagatcccgctccagggccgtctgggatccacctcgcgcgccccgcgctgggcc
atcgcctacaagtacgcccccgaagaggtcaacaccaagctcgtcaacatccgggtgggc
gtgggccgtaccggccgtgtcaccccgtacgcacaggtcgagccggtgacggtggccgga
tccgaggtcgagttcgccaccctgcacaaccaggacgtcgtcaaggccaagggcgtgctc
atcggcgacacggtggtgctgcgcaaggccggggacgtgatcccggagatcctcggcccg
gtggtcgatctgcgcgacggcacggagcgcgagttcgtgatgccctccgagtgccccgag
tgcggcacaccgctcaggcccatgaaggagggcgacgtcgacctccgctgcccgaacgcg
cggggctgcccggcgcagctgcgcgagcgcctgttctatctcgcgggccgcaaggcgctg
gacatcgagcacttcggatatgtggccgccaccgccctcacccggcccctggagccggcc
gagcccccgctgaaggacgagggcgacctgttcgacctcaccgtcgaacagctgctgccc
atcagggcgtatgtcctcgaccaggacagcggtcttcccaagcgcgacccgaagacgggc
gaggagaagatcgccacggtcttcgccaaccagcagggcgaacccaagaagaacgcgctc
gcgatgctggagaacatcgcggccgccaaggagcgcccgctggcccgtgtcctcaccggg
ctgtcgatccgtcatgtgggtccggtcgccgccgaggcgctggcccgtgccttccgctcg
atcgaccgtatcgaccaggccaccgaggaggagctgcggaacacggacggtgtgggggag
atcgtcgcgcagtccgtcaaggagtggttcgccgaggactggcaccgcgacatcctccgc
aagtggaaggccgcgggcgtccgcatggaggaggagggctccgcggaggacgagggaccc
cggccgctggaaggcctcacggtcgtcgtcaccggcaccctcgagcgcttcacccgcgac
ggcgccaaggaggccctgcagagccggggcgcgaaagtgaccggttccgtctccaagaag
acctccttcgtggtggtgggcgacaaccccggatcgaagtacgacaaggcgatgcagctg
aaggttccggtgctgaacgaggacggtttcgccgtcctgttggagcaaggccccgacgcg
gcttccgaagtcgccgtcccggccgaggagtag
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integrated database retrieval system
