KEGG   Streptomyces niveus: BBN63_32850
Entry
BBN63_32850       CDS       T04887                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
snw  Streptomyces niveus
Pathway
snw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:snw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BBN63_32850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:snw03400]
    BBN63_32850
Enzymes [BR:snw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BBN63_32850
DNA repair and recombination proteins [BR:snw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BBN63_32850
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AQU70261
UniProt: A0A1U9R2E6
LinkDB
Position
complement(7611848..7612810)
AA seq 320 aa
MVTLPRITPMLATPGRLPLPGGDERWAVETKQDGQRAIMYLPGDGTLELRSRSGEIITRA
YPDLLDIGGALPGTPAVLDGEIIALDEHGRADFERLQSRMGLIRPPAGAVERAARRAPAH
LVLFDVMFLGGRSRLAQPYAERRQELRSLGLDGPSCSVPGAAIGRSAEALELTHTSGLEG
IVCKLLSSRYEPGVRSRSWIKIRNTLTVDAIVGGWVPGRGRLAGLPGALLIGQRAEGRLR
YIESVGTGWSERERTDLARLLSVAVITDCPFTPAPRIVGARWVLPRLVGEITYTSRTRAG
YLRHPSWHRLRPGLAPEDLG
NT seq 963 nt   +upstreamnt  +downstreamnt
atggtcacccttccgcggatcacgcccatgctcgccaccccgggccggctgccgctgccc
ggcggcgacgagcggtgggcggtggagaccaagcaggacggccagcgggcgatcatgtat
ctgccgggcgacggaaccctcgaactgcgctcccgctccggtgagatcatcacccgggcc
taccccgacctgctggacatcggcggcgcactccccgggacgcccgccgtactggacggc
gagatcatcgccctcgacgagcacgggcgcgccgacttcgagcgcttgcagtcccggatg
ggactgatccgccctccggccggggctgtcgagcgggccgcccgacgggcacccgcccac
ctggtcctgttcgacgtgatgttcctcggcgggcggagccgactcgcacagccctacgcc
gagcgacggcaggagctgcgctcgctgggactggacgggccgagctgctcggtgcccggc
gcggcgatcggccgcagcgcagaagccctcgaactcacccacacgtccgggctggagggg
atcgtatgcaaacttctgtcctcccggtacgagccgggggtccggtcccgctcgtggatc
aagatcaggaacacgctcaccgtcgacgcgatcgtcggcgggtgggtgccgggccggggc
cgcctggccggcctccccggcgcgctcctcatcggacagcgggcggaaggccgcctccgg
tacatcgagagcgtcggcaccgggtggagcgagcgtgaacggaccgacctggcacggctg
ttgtccgtcgccgtcatcaccgactgccccttcaccccggcgccccggatcgtcggcgcc
cgctgggtgctgccgcgcctggtcggtgagatcacctacacctcccgaacccgcgccggg
tacctgcgccacccctcgtggcaccggctacgccccggcctcgccccggaagacctcgga
tga

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