Streptomyces niveus: BBN63_32850
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Entry
BBN63_32850 CDS
T04887
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snw
Streptomyces niveus
Pathway
snw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBN63_32850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snw03400
]
BBN63_32850
Enzymes [BR:
snw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBN63_32850
DNA repair and recombination proteins [BR:
snw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBN63_32850
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AQU70261
UniProt:
A0A1U9R2E6
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All DBs
Position
complement(7611848..7612810)
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AA seq
320 aa
AA seq
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MVTLPRITPMLATPGRLPLPGGDERWAVETKQDGQRAIMYLPGDGTLELRSRSGEIITRA
YPDLLDIGGALPGTPAVLDGEIIALDEHGRADFERLQSRMGLIRPPAGAVERAARRAPAH
LVLFDVMFLGGRSRLAQPYAERRQELRSLGLDGPSCSVPGAAIGRSAEALELTHTSGLEG
IVCKLLSSRYEPGVRSRSWIKIRNTLTVDAIVGGWVPGRGRLAGLPGALLIGQRAEGRLR
YIESVGTGWSERERTDLARLLSVAVITDCPFTPAPRIVGARWVLPRLVGEITYTSRTRAG
YLRHPSWHRLRPGLAPEDLG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggtcacccttccgcggatcacgcccatgctcgccaccccgggccggctgccgctgccc
ggcggcgacgagcggtgggcggtggagaccaagcaggacggccagcgggcgatcatgtat
ctgccgggcgacggaaccctcgaactgcgctcccgctccggtgagatcatcacccgggcc
taccccgacctgctggacatcggcggcgcactccccgggacgcccgccgtactggacggc
gagatcatcgccctcgacgagcacgggcgcgccgacttcgagcgcttgcagtcccggatg
ggactgatccgccctccggccggggctgtcgagcgggccgcccgacgggcacccgcccac
ctggtcctgttcgacgtgatgttcctcggcgggcggagccgactcgcacagccctacgcc
gagcgacggcaggagctgcgctcgctgggactggacgggccgagctgctcggtgcccggc
gcggcgatcggccgcagcgcagaagccctcgaactcacccacacgtccgggctggagggg
atcgtatgcaaacttctgtcctcccggtacgagccgggggtccggtcccgctcgtggatc
aagatcaggaacacgctcaccgtcgacgcgatcgtcggcgggtgggtgccgggccggggc
cgcctggccggcctccccggcgcgctcctcatcggacagcgggcggaaggccgcctccgg
tacatcgagagcgtcggcaccgggtggagcgagcgtgaacggaccgacctggcacggctg
ttgtccgtcgccgtcatcaccgactgccccttcaccccggcgccccggatcgtcggcgcc
cgctgggtgctgccgcgcctggtcggtgagatcacctacacctcccgaacccgcgccggg
tacctgcgccacccctcgtggcaccggctacgccccggcctcgccccggaagacctcgga
tga
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