Streptomyces nigra: DC008_28495
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Entry
DC008_28495 CDS
T05839
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snz
Streptomyces nigra
Pathway
snz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DC008_28495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snz03400
]
DC008_28495
Enzymes [BR:
snz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DC008_28495
DNA repair and recombination proteins [BR:
snz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DC008_28495
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWE53236
UniProt:
A0A2S1IKU9
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All DBs
Position
6181835..6182770
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AA seq
311 aa
AA seq
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MSDGDGATTVRAGRRTVEVKRVDKVLFPGGGGAKEYTKGDLIEYHRAVAPYMLPHLRGRP
LMLERHPDGVDGPTFMQKNTPEHYPDWITRVEVPKEDGTVTHTVCDDTATLVFLADQACL
TLHRWLSRTDTAGGVNHPDRLVFDLDPPGDDFEQVRAAAHALHGLLDELELPSAPMTTGS
RGLHVVVPLDGRDDFDTVRDFAHEVAEALVAAHPDRLTTAARKKDRGDRLYLDVQRNAYA
QTAVAPYTVRARPGAPVATPVAWDAVDDPELHARRWTIADAVEQAATEPWAELGRARALG
PARRRLATLRD
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacggtgacggcgcgacgacggtgcgggcgggccgccgcaccgtcgaggtcaag
cgcgtcgacaaggtgctcttccccggcggcgggggagcgaaggagtacaccaagggcgat
ctgatcgagtaccaccgggccgtcgccccgtacatgctgccgcatctgcggggccgtccc
ctgatgctggaacggcaccccgacggcgtcgacggccccacgttcatgcagaagaacacg
ccggagcactacccggactggatcacccgcgtcgaggtgcccaaggaggacggcacggtc
acgcacaccgtctgcgacgacacggccaccctcgtgttcctcgccgaccaggcgtgtctg
accctgcaccgctggctgtcgcggaccgacaccgcgggcggcgtgaaccacccggaccgg
ctcgtgttcgacctcgacccgcccggcgacgacttcgaacaggtccgggccgccgcccac
gcgctgcacgggctcctggacgaactggagctcccgtcggcgcccatgacgaccggctcc
cgcggactgcacgtcgtcgtcccgctcgacggccgggacgacttcgacaccgtccgggac
ttcgcgcacgaggtcgccgaggcgctcgtcgcggcccatccggaccggctgaccacagcc
gcccgcaagaaggaccgcggcgaccgcctctacctggacgtccagcgcaacgcctacgcg
cagaccgccgtcgccccctacaccgtccgcgcccggcccggcgcccccgtcgccaccccc
gtggcctgggacgccgtcgacgacccggagctgcacgcccgccgctggaccatcgccgac
gccgtcgagcaggccgccaccgagccctgggcggagctcggccgcgcccgcgccctcggc
ccggcccgccgccggctcgcgaccctgcgtgactga
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