Solenopsis invicta (red fire ant): 105200387
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Entry
105200387 CDS
T03916
Name
(RefSeq) histone deacetylase HDAC1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03082
ATP-dependent chromatin remodeling
soc03083
Polycomb repressive complex
soc04213
Longevity regulating pathway - multiple species
soc04330
Notch signaling pathway
soc04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105200387
03083 Polycomb repressive complex
105200387
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
105200387
04350 TGF-beta signaling pathway
105200387
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
105200387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soc03036
]
105200387
Enzymes [BR:
soc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105200387
Chromosome and associated proteins [BR:
soc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
105200387
HDAC complexes
Sin3A-HDAC complex
105200387
BRAF-HDAC complex
105200387
REST complex
105200387
SHIP complex
105200387
MiDAC complex
105200387
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
105200387
Heterochromatin formation proteins
Other heterochromatin formation proteins
105200387
Chromatin remodeling factors
NuRD complex
105200387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
105200387
NCBI-ProteinID:
XP_025988582
LinkDB
All DBs
Position
4:complement(28558128..28562010)
Genome browser
AA seq
493 aa
AA seq
DB search
MQPFKRHVSYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGIYRKMEIYRPHKATAEE
MTKFHSDDYIKFLRSIRPDNMPEYNKQMQQFNVGEDCPVFDGLYEFCQLSAGGSVAAAVK
LNKQASEICINWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDVHHGDGV
EEAFYATDRVMTVSFHKYGEYFPGTGDLHDVGAGKGKYYAVNVPLRDGMDDESYESIFVP
VISKVMEMFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMLGGGGY
TIRNVSRCWTYETSVALGCEIDNELPYNDYFEYFGPDFKLHISPSNILNQNTIEYLDKIK
TRLFENLRMLPHAPGVQIQVIPEDGAIIEDLEIEENMNLDERLPQCDLDKRIQRENEYSD
SEDEGEGGRRDNRSYRMFTKRLRLEKNQEIGIKNLNVKREDNKKLELKENMKDEKVNFMN
EEIKKRTEIISGK
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgttcaaaagacacgtctcgtattattatgatagtgatattggaaattattat
tatggccaagggcatcctatgaagccgcatcgtataaggatgacacacaatctactcttg
aactatggtatttataggaagatggagatatatcgacctcataaagctacagcagaagaa
atgacaaaatttcatagcgatgattacatcaaatttttgagatcaatacgcccagacaat
atgccggaatacaacaaacaaatgcaacaatttaacgtaggagaagattgccctgttttc
gacggcttgtatgaattttgtcagttatcagctggtggatctgtagctgctgctgtaaaa
ctcaacaagcaagcctcagaaatttgcatcaattggagcggtggcttacatcatgcaaag
aaaagcgaagcttctggtttttgctatgtaaatgatattgtacttgcaattttagaattg
ctaaaatatcaccaaagagttttgtacattgacatcgatgttcatcatggcgatggtgtg
gaggaagctttttatgcaacggatagagtaatgacagtctcatttcacaagtatggagaa
tattttcctggtacgggagaccttcacgatgtaggagcaggaaaaggaaagtattatgca
gttaatgtacctttaagggatggtatggatgatgaaagctatgaatcgatatttgttcct
gtcatctctaaagttatggagatgtttcaaccttccgctgttgttttacagtgcggagca
gattcattgacaggcgatcgattgggatgcttcaatttaactgtgagaggtcacggcaaa
tgcgtagaatttgtaaaaagatataatttaccttttttgatgctgggaggtggtggttat
accatcagaaatgtgtccagatgttggacatatgagacatcggtggctcttggatgtgaa
attgataatgaacttccatataatgattatttcgaatatttcggccctgattttaaatta
catattagtccttcaaatatattgaatcaaaacactatcgaataccttgacaaaattaaa
acaagactgtttgaaaatttgagaatgctacctcatgcacctggcgtacaaattcaagta
ataccagaagatggtgccattatagaagatttagaaattgaagaaaatatgaatcttgat
gaaagactgcctcaatgtgatttagataaaaggatacagcgtgaaaacgagtatagtgat
agtgaagatgaaggtgaaggtggacgaagagacaacagatcgtacagaatgtttacaaag
cggctgcgtttggaaaaaaatcaagaaataggtattaagaatcttaatgtgaagagagaa
gataataaaaaattagagttgaaagaaaatatgaaggatgagaaagtaaattttatgaat
gaagaaataaaaaagaggacagaaataatatctggcaaatag
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