Serratia odorifera: NCTC11214_02821
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Entry
NCTC11214_02821 CDS
T06612
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sof
Serratia odorifera
Pathway
sof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC11214_02821 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_02821 (recD)
Enzymes [BR:
sof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC11214_02821 (recD)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC11214_02821 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
PhoH
nSTAND3
AAA_16
UvrD_C
AAA_28
T2SSE
CbiA
MdcG_N
SRP54
TrwB_AAD_bind
AAA
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
VDZ58563
UniProt:
A0A447KSP6
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All DBs
Position
1:2590883..2592757
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AA seq
624 aa
AA seq
DB search
MIDLLQQAATLGVLRPLDVQFARVVAPPDRPDMLLAAACLSAEAGAGHVCLLLQQLMPEN
LFDGRQPALAQAVWQAAGQPDLDDWRQRLLSSPAVSDGSLPTPLVLQKQRLYLQRMWQSE
GQVAAFISSDSIPQVIETQRLRAILDQLFGTATDTPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLAEGARLRIQLAAPTGKAAARLTESLGSASRQLPLSPEQRALFPT
EAATLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPPHARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSDARAAQLAQLTGCTLSGQSAQGDAAVRDSLCLL
RKSYRFDADSGIGQLAMAVNAGDNKRAWAALNGSFSDVAGYPLVETEDYQALLDACVAGY
RDYLQRVAAGAPAVEILAAFGRFQVLCALREGPFGVAGLNERIESGLQRAGLIRRNLASA
GRWYRGRPVMIGRNDSALGLFNGDIGIALPGENGELRVHFQLPDGNIKSVQPSRLPAHET
AFAMTVHKSQGSEFDHTVLVLPNHFLPVLTRELVYTAITRARQQLSLYASEKVLNSAIRT
PTQRRSGLAERLVMVAQPSETPLG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatttattgcagcaagcggcaacgcttggcgtactgcgcccgctggacgtgcag
ttcgcacgggtggtagcgccgccggatcgaccggatatgctgctggccgccgcttgcctc
agcgcggaagccggtgcggggcacgtctgtctgctgttgcaacagctgatgccggagaac
ctgttcgacgggcggcaaccagcattggcacaggcggtgtggcaggcagcaggacagccc
gatctggatgactggcggcaacggttgttgagctcgccggcggtcagtgacggcagtctg
ccaacgccgctggtgctgcaaaaacagcggttgtatttacagcgcatgtggcaaagtgaa
ggccaggtagcggcatttatcagcagcgatagcataccgcaggttatcgaaactcagcgt
ctgcgcgcgatcctcgaccagctgttcggtacagcaacggacacgccggactggcagaaa
attgccgcggcggtggccgcgacccggcgcatcgcggtgatatccggcgggccgggcacc
ggtaaaaccaccaccgtggccaaactgctggccgcattggtgcagttggccgaaggcgcg
cgtttgcgcattcaactggcagcaccaaccggcaaggcggcagcgcgactgaccgagtca
ctgggcagcgccagccgacaattgccgctcagccctgaacagcgggcgttattccccacc
gaagcagcaacgctgcaccgcctgctgggcgcacagccgaacagccaacgcatgcgctat
catcgtggcaatccgctgcatctcgacgtgttggtggtggatgaggcgtcgatggtcgat
ctgccgatgatggcgcgtctgatcgccgccttgccgccgcacgccagggtgatttttctt
ggcgatcgcgatcaactggcctcggtggaagcaggcgcggtgctgggagatatctgccgt
tttgccgagcaaggctatagcgacgctcgcgctgcacaattggcacaattgacgggctgt
acattgagcggtcagagcgcgcagggtgacgcagcggtacgcgatagcctgtgtttgctg
cgcaagagttaccgttttgacgccgattccggcattggtcaactggcgatggcggtgaat
gccggcgacaacaaacgagcctgggccgcgctcaacggcagttttagcgacgttgccggt
tatccgctggtggaaaccgaggattatcaggcgttgctggatgcctgtgtggccggttat
cgcgactatctccagcgggtcgccgccggagcgccggcggtcgagatcctggcggcattt
ggccgcttccaggtgctgtgcgcgctgcgggaaggaccctttggcgttgccggactgaac
gagcggattgaaagcgggttgcaacgtgcggggctgattcgtcgcaacctggcttccgcc
gggcgctggtatcgtggtcgaccggtgatgattggccgtaacgacagtgcgttggggctg
tttaacggtgatatcggcattgcgctgccgggggagaacggcgaactgcgtgtgcatttc
caattgccggacggcaatatcaaatcggtacaacccagtcgtttgccggctcatgaaacc
gcctttgccatgacggtgcacaagtctcagggttcagagtttgaccatacggtgctggta
ctgcccaaccactttctgccggtgttgacgcgcgaactggtgtataccgccattacccgc
gcgcgtcagcagctgtcgctgtatgcaagtgaaaaggtgctcaacagcgccatccgcacg
ccaacccagcggcgcagcgggctggcggagcggttggtgatggtagctcagcccagtgag
acaccgctgggctaa
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