Solanum tuberosum (potato): 102580894
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Entry
102580894 CDS
T02981
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
sot
Solanum tuberosum (potato)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
Helicase_RecD
UvrD-helicase
ATPase
PhoH
SRP54
Viral_helicase1
AAA_16
Ribosomal_S13_N
AAA_22
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
102580894
NCBI-ProteinID:
XP_006358610
LinkDB
All DBs
Position
Un
AA seq
1267 aa
AA seq
DB search
MDSQSNSLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFHELSQPIRSSAWPTPSDSLVS
EAPDRPQSSSDASQASGKSRGGDGGRSSSSKISSNKAAAVAVDALAAGMSGLNFEETGDD
ESFEYGKGDFAVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWD
LSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDANLEDLEKPGV
DDEPQPVGLKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTVRWDIGLNKKRVAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVT
HGLSVDFVWKSTSFDRMQTAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTVPRRFGAP
GLPELNASQVFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELYKLQQLKDEQ
GELSSGDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAGEP
ECLIPLVLGAKQIVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRM
HPALSEFPSNSFYEGTLQNGVTINERQSLGIDFPWPVPNRPMFFYVQMGQEEISSSGTSY
LNRTEAASVEKLVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPSDNYGSPAS
SNPNADRRSSHSRGSYMAPGPSNGTHRPGVYSSGYPMPRVPISPYHGGPPQPYAIPARDA
IHGPVGAVPHVPHPGNRGFGAGRGNANAPIGSHLSHQQASQQPIGSHGPNFNFSALENPN
TQPSGGGPLSQPGYASNMAIQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYHVTDFS
TQASQSGYAVDYVNQGAQAGFPGNYLNHNSQAGYSRFGSGNEFMSQDYMAHGSQGLFTQA
GYSDPSQEDSPQNHFGMSNANPLQSQSLLNPLYSQPFGHYNTQPLNMQSSQPQQPQGSQN
QKLHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagagcaacagtttgtacgacacagcgtcgcagccggacacgggtaacgat
gcgtacacatttttggaattcaacacacagggagaagaatttgattatcctgagtttcat
gagctttcacagccaattagatcatctgcttggcctacaccgtctgattccttagtctct
gaagctcctgatcgtccgcagtcgtcgtctgatgcttctcaagcgtcaggtaaatcacgt
ggcggtgatggtggacggagtagtagtagtaagattagtagtaataaggcggcggcggtg
gcagtggatgcattggcggcaggaatgagcgggttgaattttgaagagactggtgatgat
gagagttttgagtatggaaaaggagattttgcggttgaacatgcttgtaagtactgcgga
gtgacgaatcctgcttgtgtggttaggtgtaacgtcccatcttgccgcaaatggttctgt
aattcgagagggaatacttcaggctctcatattgttaatcacttggtccgagcgaaacac
aaggaggtttgtcttcataaagatagtccactgggagaaacaattctagagtgctacaac
tgtggatgtcgaaacgtctttcttcttggtttcatctctgccaagacagagagtgtcgtt
gttctcctctgcagggaaccatgtttaaatgttaatgcgctgaaggatatgaattgggat
ttgagtcagtggtgcccccttatcgatgataggtgtttcttgcagtggctcgttaaggtt
ccatcagagcaagaacagttgcgggcacgacaaatcagtgctcaacaaataaataaaatt
gaagaattgtggaagacaaatcctgatgctaacctggaagatcttgagaagccaggtgtg
gatgatgaacctcagcctgttggcttgaagtatgaagatgcctatcagtatcaaaacata
tttgcaccgctgatcaagcttgaagctgactatgataagatgatgaaagagtctcaaagt
aaagataacctcactgttcgatgggatataggtctcaacaagaagcgggtagcatatttt
gttttcccgaaggaagacaatgagttacgactagtacctggtgatgagctacgactgcgt
tattcaggggatgcagctcatccagcatggcaatcagtggggcatgtgataaaattaact
gctcaagaagaggttgcccttgagcttcgtgccagtcagggagttccggttgatgtgacc
catgggctgagcgttgactttgtttggaagagtacgagctttgacaggatgcagactgca
atgaaaacttttgctgtggatgagacaagtgttagtgggtatatttaccatcacctgcta
ggtcacgaagttgagatgcagatggttcggaatacagttcctcgccgttttggtgctcct
ggtcttccagagcttaacgcttctcaggtttttgctgtaaaaagtgttctccaaaagccc
gtcagtttaattcaaggtccgcctggtacgggaaaaactgttacctccgctgccatcgtg
tatcatatggccaagcaaggccagggtcaggttttggtctgtgcacccagtaacgtggct
gtggaccaattagcagagaaaataagtgctactggactgaaggttgtaaggctctgtgct
aagtcgagagaagctgtcagttctcctgttgagcatttaacccttcactatcaggttcgt
catcttgacacatccgagaagagtgaactttacaagttacagcaactgaaggatgaacaa
ggagaactctccagcggtgatgagaagaaatataaagctctgaaacgggctacagagagg
gagattgctcaaagtgctgatgtgatttgttgcacctgtgttggtgctggagatcctaga
ttggcaaattttagattccgtcaggtgctcattgatgagtccactcaagcaggtgaacct
gaatgccttattcctttggttcttggagcaaagcagattgtcctcgttggtgatcactgc
cagcttggacctgtcattatgtgcaagaaagctgcacgggctggacttgctcaatccctg
tttgaacgtcttgtactgctgggtgtgaagccaatcaggttgcaggtacaataccgtatg
catcctgcactgtcagagttcccgtcaaatagtttttacgaaggtacacttcaaaatggt
gtaaccatcaatgagagacaatcattaggcattgattttccttggcctgtgccaaaccgt
cccatgttcttttatgtccagatgggacaagaggagatcagttctagtggaacttcctat
ctaaatagaactgaagctgctagcgttgagaagctagtgactacgttcctcaaaagtggt
gtagtccctagtcagattggagttataacaccatatgagggtcaacgagcatatattgta
aattatatgtctagaaatggtgctttaaggcagcaactttacaaggaaattgaggttgca
agtgtagattcatttcaaggaagagaaaaagattatatcatcttgtcttgtgtcaggagc
aatgaacatcagggcattgggtttctgaatgatcctcgcaggcttaatgttgctcttaca
cgtgctcgttatggaatcgttatcctaggaaatcctaaagtgttgagcaagcagcctctc
tggaatggcttgctgacacactacaaggagcatgaatgcttggtagaaggtcctttaaat
aacttaaagcaaagcatggttcagtttcagaagccaaaaaagatctacaatgaccgcagg
cttttctttggtggtggacctggaattgttcctagtgataattatggatctcctgcctca
tcaaaccccaatgctgacaggcgaagtagtcactctaggggttcttacatggcacctggt
ccatccaatggtactcacagacccggtgtctattcttctggttatccaatgcctcgagtt
cccatctccccttaccatggcggccctccccaaccgtatgcaattcctgctcgtgatgct
atacacgggcctgttggagcggtacctcatgttccacatccaggtaaccggggttttggt
gccgggcgtgggaatgccaatgctccgattggtagccatctttctcaccagcaagcttcc
cagcaacctattggaagtcatgggcctaacttcaacttttctgcacttgaaaatccaaac
actcaaccatctggcggaggacctttatctcaacctggatatgcttctaatatggccatt
caaggaccaagccagacatttcgcgatggattttcaatgggtggcatgtcacaggatttc
ttgggagatgatttcaagagccagggatcccatgttccatatcatgttactgacttctct
acacaggcttctcaaagcggatatgctgttgattatgtaaatcagggagcacaggctggt
tttccaggaaattatttgaaccataattcacaagctggatactcacgttttggttcagga
aatgaatttatgtcacaggattacatggctcatggatcccaaggtctcttcacacaagct
ggatacagcgatccatcacaagaggacagtccacaaaaccattttggcatgtccaatgca
aatccacttcagtctcagagtttactcaatccactgtactctcagccttttgggcactac
aacacccaaccattgaacatgcaaagctcccaacctcaacagcctcaaggctcacaaaat
cagaaactccattacaacggttaa
DBGET
integrated database retrieval system
