Solanum tuberosum (potato): 102588627
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Entry
102588627 CDS
T02981
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102588627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102588627
Spliceosome [BR:
sot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102588627
Complex C
U5 SnRNP specific factors
102588627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
102588627
NCBI-ProteinID:
XP_006359523
UniProt:
M1D118
LinkDB
All DBs
Position
Un
AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREEEDDELPDRSDDERVASDGEQPGASNGWLATQDD
IDMDNQVILAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPALVRNVALVGHIHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMSAALRLADGAVLIV
DAVEGVMVNTERAIRHAILERIPIVLVINKVDRLITELKLPPKDAYFKLKHIVETVNNQI
TAASSTAGNAQVIDPVLGNVCFASATAGWSFTLQSFAKLYVKLHGIAFDANKFASRLWGD
FYFDPDTRSFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
NCDSAGPLMVNVTKLYPKPDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNLEFDEDVYIFRPLQFNTLS
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
IDWPRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgaatttgggaactatattggtcctgaaatagagtctgat
caggaaagtgatagggaagaggaagacgatgagcttcccgataggagtgatgatgagaga
gttgcatctgatggtgagcagcctggtgcgtcaaatggatggcttgccactcaagatgat
attgatatggataaccaagttattcttgctgaagacaagaaatactatccaacagctgaa
gaggtttatggtgaagaagttgagacgttggtcatggatgaagatgaacagccacttgaa
atgccaataattaaaccggtgaagaatctcaagtttgaacttggggtgaaggattcgtcc
acttatgtttcgactcagtttctcttaggtctgatgtcgaacccagcattggttagaaat
gttgctctagtgggacacatacatcacgggaagactttgtttatggatatgctggtggaa
caaacacaccatatatctacgtttgatcagaacagtgagaagcatatgaggtatacagac
acaagaatagatgagcaagagaggaggatatcaattaagtctgttcctatgtcactagtc
ttggaagacagcaattcaaagtcttacctatgtaacattatggatgctcccggccatgtc
aacttctccgatgaaatgtccgctgctttaagacttgcagatggggcagttttgattgtt
gatgcagttgaaggagtgatggtaaatacagaaagggccattaggcatgcgattctagaa
cgtattccgattgttcttgtgatcaacaaggttgacagattgataactgagcttaaattg
ccaccgaaggacgcctacttcaaattaaagcacatagttgaaacagtcaacaatcaaatt
acagctgcctcgtccacagctggaaatgcacaagtaattgatcctgtattagggaatgtc
tgctttgcaagtgcaacagcaggatggtcattcactctgcagtcatttgccaaactgtat
gttaagcttcacggaattgcatttgatgccaacaagtttgcttcgcggctttggggggac
ttctactttgatcctgatacaagaagtttcaagaagaaaccgcctgcaagtggggttgaa
agatcttttgttcagtttgttcttgaacctctttacaaaatctatagccaagtgatcgga
gagcacaagaagagtgttgaagcaaccctagcagaacttggggtgacactaagcaatgca
gcttaccgtctaaatgtaaggcctctgctgaggctggcttgcagtgctgtatttggaact
gccactgggtttactgacatgttggttcatcacatcccttctgctaaagctgctgctgct
aggaaagtggaacacatatacacgggtccaaaggattcagcaatttacaaagcaatggag
aattgtgattccgctggcccgttgatggttaatgtgactaagctgtatccgaaaccagat
tgtagcgtttttgatgcttttggtagggtttacagcggggaaataatgacagggcagaca
gtacgtgttctgggtgagggctattcacctgatgatgaagaggatatgactgtaaaagaa
gttacaaagctgtgggtatatcaagctagatacaggatacccataagtaaggctcctcca
ggtgcatgggttctgattgaaggagtggatgcctcaatcatgaaaactgctactctttgt
aatttggaatttgatgaggatgtatacatatttcgccccctccagtttaatactctttcc
gtggtgaaaacagcaactgaacctttgaatcctagcgaattgcctaaaatggtggagggg
cttaggaaaatcagcaagagttatcctcttgcaatcacaaaggttgaagagtccggtgaa
cacacaatattaggtactggtgaattgtacctagattccataatgaaggaccttagggag
ctttactccgaggtggaagtgaaggtggctgatccagttgtctcattctgtgaaactgtg
gtggagtcgtcttcaatgaaatgttttgctgaaacacctaacaagaaaaataaaatcacc
atgattgctgaaccactggagagaggacttgctgaggatatcgagaacggtgttgtaagc
atagattggcctagaaagaaactaggtgaatttttccagaccaaatatgactgggatctt
cttgctgcacggtctatttgggcatttggacctgataagcaggggcctaacatcttattg
gatgatacactctcaagtgaagtcgacaagagcttgttgaatgctgttaaagattccatt
gttcaggggtttcaatggggagctcgggaaggacccctctgcgatgagcccattagaaat
gttaaattcaagatcgttgatgcgaagattgcaccggagccgttgcatcgtggaacaggt
cagattattccaactgcacgacgtgtagcctactctgctttccttatggcaacacccaga
cttatggaacctgtgtattatgtggagatccaaactcccatggattgtctctctgctata
tacaccgtgttgtctcgtaggcgtggacacgttactgctgatgttcctcaacctggaacc
cctgcctacattgtcaaggcatttttaccggttattgagtcctttggttttgaaacggac
ttgaggtatcacacccaagggcaggcattttgtctttcagtatttgatcattgggctatt
gtccctggggatcctcttgacaagagcattgttctacgaccactggagcctgccccaatc
caacatctggctcgtgagttcatggtgaagacaaggcgtagaaagggaatgagtgaagac
gtgagcatcaacaagttctttgacgaggctatgatggtggagcttgcacagcaggatgca
gatcttcacctgcagatgatgtag
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