Solanum tuberosum (potato): 102590973
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Entry
102590973 CDS
T02981
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102590973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sot03041
]
102590973
Spliceosome [BR:
sot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102590973
Complex C
U4/U6.U5 tri-SnRNP related factors
102590973
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
102590973
NCBI-ProteinID:
XP_006344710
UniProt:
M1CAV6
LinkDB
All DBs
Position
Un
AA seq
377 aa
AA seq
DB search
MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
FGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYL
EPLYNDYRKLRRKLADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKLLEPR
RSALEDDFEEEEEKDEDEQLATGLDDEHEKDYYRGGSPARERDRDRRRDSHRHRDRDYDR
DRDYDRDYDRDRDYDRERGRRDRDRDRDRDRHRLRDDKDYGRERDRERDRERDRRDRGRR
RSYSRSRSRSRDRKDREDDRRKRHARSSASPARDEPKKKKEKKEKKEKKDDGTDHPDPEI
AEANRLRASLGLKPLKL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgcaccgatccattggcgaagagcattaggggaacgaacccacaaaacctg
gtggagaaaatcctcaggtccaaaatataccaaaacacttactggaaagaacaatgtttc
gggttgacagcagaaacactagtcgacaaagccatggaacttgatcacctcggtggaaca
ttcggcggtaatcggaaaccctcaccatttatttgccttgtcatgaagatgctccaaatc
cagcctgaaaaagatatcgttgtggagttcatcaagaacgaagattataagtatgttcga
gttcttggggctttctatttgcgtcttacgggtacggatattgatatatatcgatatctc
gagcctctctacaatgattatcgaaagctgaggcgtaaattagctgatgggcagtatgca
ctgacacatgtggatgagtatatagatgaacttcttacaacagattactcttgtgatatt
gctttgccccgcatcaagaaaagatggatattggaacagaataaactgctggaacctcgg
agaagtgcgttggaagatgactttgaagaggaagaggagaaggatgaggatgaacaactt
gccactggattagatgatgagcatgaaaaggattattaccgtgggggaagtccagctagg
gagagagatcgggatagaagacgagatagtcacagacacagggatcgtgactatgacaga
gatcgagattatgatagagactatgacagagatcgtgattatgatagggaacgtggcaga
cgtgacagagaccgagatagagacagggaccgtcatcgcctcagggatgataaggactat
ggtcgtgagagggatcgagaaagggatagggaacgtgatagacgtgaccgtggtcgacgc
aggagttattctaggagcagaagtagaagcagagaccgtaaagatcgggaggatgaccgt
cgtaaaaggcatgctcgcagtagtgctagtcctgcccgggatgaacctaagaagaagaag
gagaaaaaggagaagaaagaaaagaaagatgatggaacagatcatcctgatccagagatt
gcagaagccaacaggcttagggcatcgcttggattaaagcctttgaagctatga
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