KEGG   Solanum tuberosum (potato): 102590973
Entry
102590973         CDS       T02981                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102590973
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sot03041]
    102590973
Spliceosome [BR:sot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    102590973
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    102590973
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 102590973
NCBI-ProteinID: XP_006344710
UniProt: M1CAV6
LinkDB
Position
Un
AA seq 377 aa
MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
FGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYL
EPLYNDYRKLRRKLADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRWILEQNKLLEPR
RSALEDDFEEEEEKDEDEQLATGLDDEHEKDYYRGGSPARERDRDRRRDSHRHRDRDYDR
DRDYDRDYDRDRDYDRERGRRDRDRDRDRDRHRLRDDKDYGRERDRERDRERDRRDRGRR
RSYSRSRSRSRDRKDREDDRRKRHARSSASPARDEPKKKKEKKEKKEKKDDGTDHPDPEI
AEANRLRASLGLKPLKL
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggcgaatcgcaccgatccattggcgaagagcattaggggaacgaacccacaaaacctg
gtggagaaaatcctcaggtccaaaatataccaaaacacttactggaaagaacaatgtttc
gggttgacagcagaaacactagtcgacaaagccatggaacttgatcacctcggtggaaca
ttcggcggtaatcggaaaccctcaccatttatttgccttgtcatgaagatgctccaaatc
cagcctgaaaaagatatcgttgtggagttcatcaagaacgaagattataagtatgttcga
gttcttggggctttctatttgcgtcttacgggtacggatattgatatatatcgatatctc
gagcctctctacaatgattatcgaaagctgaggcgtaaattagctgatgggcagtatgca
ctgacacatgtggatgagtatatagatgaacttcttacaacagattactcttgtgatatt
gctttgccccgcatcaagaaaagatggatattggaacagaataaactgctggaacctcgg
agaagtgcgttggaagatgactttgaagaggaagaggagaaggatgaggatgaacaactt
gccactggattagatgatgagcatgaaaaggattattaccgtgggggaagtccagctagg
gagagagatcgggatagaagacgagatagtcacagacacagggatcgtgactatgacaga
gatcgagattatgatagagactatgacagagatcgtgattatgatagggaacgtggcaga
cgtgacagagaccgagatagagacagggaccgtcatcgcctcagggatgataaggactat
ggtcgtgagagggatcgagaaagggatagggaacgtgatagacgtgaccgtggtcgacgc
aggagttattctaggagcagaagtagaagcagagaccgtaaagatcgggaggatgaccgt
cgtaaaaggcatgctcgcagtagtgctagtcctgcccgggatgaacctaagaagaagaag
gagaaaaaggagaagaaagaaaagaaagatgatggaacagatcatcctgatccagagatt
gcagaagccaacaggcttagggcatcgcttggattaaagcctttgaagctatga

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