Sphingomonas panacisoli: FPZ24_12115
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Entry
FPZ24_12115 CDS
T07288
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
spai
Sphingomonas panacisoli
Pathway
spai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FPZ24_12115 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_12115 (xth)
Enzymes [BR:
spai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
FPZ24_12115 (xth)
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
FPZ24_12115 (xth)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
QDZ08130
UniProt:
A0A5B8LM13
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Position
2409088..2409882
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AA seq
264 aa
AA seq
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MIIATYNVNGVNGRLPVLLRWLAERQPDVVCLQELKAPQDKFPEAAIAEAGYEAIWHGQK
SWNGVAILSRIGTPVETRRALPGDPDEAQSRYIEAAVGGVLIGGLYLPNGNPRPGPKFDY
KLRWFDAFARHARELLDADMPVVLAGDYNVMPTDLDVYKPERWRDDALFAPEVRAAYANL
VAQGWTDALRTQHPDETIYTFWDYFRNAYGRNAGLRIDHLLLSPTLAGRLRAAEVDRHVR
NWEKTSDHAPVWIELGEATRRSRR
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
gtgatcatcgccacctataacgtcaacggcgtgaatggccggctccccgtgctgctacgg
tggctcgccgaacggcaaccggacgtggtttgtctgcaggagttgaaagcgccgcaggac
aagttccccgaagccgcgatcgcagaggctggatacgaagcgatctggcacgggcagaaa
agctggaacggcgtggcgatcctcagccggatcgggacacccgtcgaaacccgtcgcgcc
ctgccaggcgatcccgacgaagcgcagagccgctacatcgaggcggcggtcggcggggtg
ctgatcggagggctctatcttcccaatggcaatccgcggccgggccccaagttcgactac
aaattgcgctggttcgacgcattcgcccgtcatgcgcgcgagctgctcgatgcggacatg
ccggttgtgttggcgggggactacaacgtgatgcccaccgacctcgacgtctacaagccg
gagcgctggcgcgacgacgcgctgttcgcgcccgaagttcgcgcggcctacgccaatctc
gtcgcgcagggctggaccgacgcgctgcgcacgcagcatcccgacgaaacgatctacacc
ttctgggattatttccggaacgcctatggccgcaatgccgggctgcggatcgaccatctg
ctgctcagcccgacgctcgccggccgcctgcgcgctgccgaggtcgaccggcacgtgcgg
aactgggagaaaacgagcgatcatgcgccggtgtggatcgagcttggcgaggcgacgcgc
cgttcacgccgctga
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