KEGG   Streptomyces parvulus: Spa2297_04340Help
Entry
Spa2297_04340     CDS       T04685                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
spav  Streptomyces parvulus
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:spav00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Spa2297_04340 (ligB)
   03410 Base excision repair
    Spa2297_04340 (ligB)
   03420 Nucleotide excision repair
    Spa2297_04340 (ligB)
   03430 Mismatch repair
    Spa2297_04340 (ligB)
Enzymes [BR:spav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Spa2297_04340 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Spa2297_04340 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Spa2297_04340 (ligB)
DNA replication proteins [BR:spav03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Spa2297_04340 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Spa2297_04340 (ligB)
DNA repair and recombination proteins [BR:spav03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Spa2297_04340 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     Spa2297_04340 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     Spa2297_04340 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
955479..957017
Genome map
AA seq 512 aa AA seqDB search
MLLARLAQVSREVAGTSARSRKTALLAELFREAEAADVPVVIPYLAGRLPQGRIGVGWKV
LSRPVAPADEPTLTVRDVDARLTALASVTGTGSQAERARLIGELMGAATEDEQRFLTGLL
TGEVRQGALDAAAVEGLAAATEAPSADVRRAVMLAGSLQAVAEALLADGPGALSRFRLTV
GRPVLPMLAHSASSVAEAVGKLGTCAVEEKLDGIRVQVHRDGGTVRLYTRTLDDITDRLP
EVTEAALALPGERFILDGEVLSLDGSGRPRSFQETAGRVGSRTDVATASRTVPVSAVFFD
ALSVDGHDLLDLPLTDRHAELARLVPEPERVRRTLVGGPEDTPAAEEFLAETLRRGHEGV
VVKGLDAGYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLHLGARTADGSFA
MLGKTFKGLTDALLAWQTERLGRLAVEEHPWGVTVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVVRYREDKRAEDADTVDTLLATHPGVAP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgcttgcccggttggcccaggtgtcgcgggaggtcgccggcacctcggcgcggtcc
cggaagaccgccctgctcgcggagctgttccgggaggcggaggcggcggacgtgccggtc
gtcatcccctatctggcgggacgcctcccgcagggcaggatcggcgtcggctggaaggtg
ctgagccgcccggtcgcgccggccgacgagcccacgctcacggtccgcgacgtggacgcc
cggctcaccgccctcgcgtcggtgaccggcaccggttcgcaggccgagcgggcgcggctg
atcggcgagctgatgggcgcggccaccgaggacgagcagcgcttcctgaccggcctgctc
accggcgaggtccgccagggagccctggacgcggccgccgtcgagggcctggccgcggcg
accgaggcgccgtcggcggacgtacgccgggcggtgatgctcgccggttccctccaggcg
gtggccgaggccctgctcgcggacggtcccggcgccctttcccggttccggctcaccgtg
ggccggcccgtgctgccgatgctggcgcacagcgcctcctcggtcgccgaggcggtcggc
aagctgggaacctgcgcggtcgaggagaagctggacggcatccgcgtccaggtgcaccgc
gacggcggcaccgtccgcctctacacccgcaccctggacgacatcaccgaccggctcccc
gaggtgaccgaggcggccctcgccctgcccggcgagcggttcatcctggacggcgaggtg
ctctccctggacgggagcggccgcccccggtccttccaggagaccgccggacgggtcggc
tcccgcaccgacgtggcgaccgcctcgcggacggtcccggtctccgcggtgttcttcgac
gcgctctccgtcgacggccacgacctgctcgacctgccgctcaccgaccggcacgcggag
ctggcccggctggtccccgagcccgaacgggtgcggcgcaccctggtcggcgggcccgag
gacacaccggccgccgaggagttcctggccgagaccctgcggcgcggccacgagggcgtc
gtcgtcaagggactcgacgccggctacagcgcgggccgccgcggcgcgtcctggctcaag
gtcaagcccgtccacacgctcgacctggtcgtgctcgccgccgagtggggccacggccgc
cgcaccggcaggctgtccaacctccacctgggcgcccgcacggccgacggctccttcgcg
atgctcggcaagaccttcaagggcctgacggacgcgctgctggcctggcagaccgagcgt
ctcggccggctggccgtcgaggagcacccctggggcgtgaccgtacgccccgaactcgtc
gtcgagatcgcctacgacggcctccagcgctccacccgctacccggccggcgtcaccctg
cgcttcgcccgcgtcgtgcgctaccgcgaggacaagcgggccgaggacgcggacaccgtg
gacaccctgctcgccacgcacccgggggtcgccccgtga

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