Solanum pennellii: 107005340
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Entry
107005340 CDS
T04130
Name
(RefSeq) WD repeat-containing protein VIP3-like
KO
K12602
WD repeat-containing protein 61
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107005340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107005340
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107005340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Ge1_WD40
Nup160
Cytochrom_D1
PQQ_3
Nbas_N
WDR54
DUF2415
Motif
Other DBs
NCBI-GeneID:
107005340
NCBI-ProteinID:
XP_015059392
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All DBs
Position
12:2594738..2598247
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AA seq
323 aa
AA seq
DB search
MKLASLDSVTNAHDDSIWSAAWVRSTEEYPALLLTGGLDETVRLWDPSNFTCVQTFTGHC
LGVVSVATHPTRRIAASASIDSFIRVFEVDTNNTIATLEAPPSEVWQLQFSPSGSNLAAA
GGGSSSVKVWDTNRWELVTTMSIPRQGAPQPSDKSTNKKFVLSVAWSPDGRLLACGSVDG
TISVFDVARAKFLHFLDGHTMPVRSLVFSPSLHDSRILFSASDDGHVHMYDAEGKTLLTS
LSGHASWVLSVDTSPDGAAIATGSSDKTVRLWDLKMRAATQTLTNHTDQVWAVAFGPTSR
TDVRSCMLASVSDDKSLSFYQYS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgaaactagcttcactagacagtgtgacaaatgctcacgacgattccatttggtcggcg
gcgtgggtccggtcgacggaggaatatccggcgttacttctcaccggaggtcttgacgaa
actgtgaggttatgggacccgagtaacttcacttgtgttcaaactttcaccggtcattgt
ctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctata
gatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagct
cctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagct
ggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccaca
atgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaattt
gtcctttcagttgcatggagtcctgatggtaggcttcttgcttgtggatcagttgatggg
actatttctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccatacc
atgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctca
gcatcagatgatggtcatgtgcatatgtatgatgcggaggggaaaacattgctcacgtct
ttatcgggtcatgcaagttgggttctgagtgttgatacctctccagacggggcagcaatt
gcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacg
caaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaagg
actgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctat
cagtactcttaa
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