Solanum pennellii: 107013045
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Entry
107013045 CDS
T04130
Name
(RefSeq) RNA-binding KH domain-containing protein RCF3-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107013045
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
107013045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KhpA-B_KH
KH_5
Motif
Other DBs
NCBI-GeneID:
107013045
NCBI-ProteinID:
XP_027771274
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All DBs
Position
3:complement(5926235..5933846)
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AA seq
707 aa
AA seq
DB search
MDEYKRNSLKQRSNPQFKRKGGSKNAKLNFSSHERSSENSQSSDTTYCILCQSKKVGSVI
GKGGSIIKALREETQAKITVADSVPGSDDRIVIISSPSTKLARRQNNDKNNDNPETKEEN
YSMEPHCAAQDALLKVHNRIVEEDLLGVQNEDKSEAVIITRLLVPNNLVGCLLGRKGDVI
QKLRSETGASIRVLSAEHLPACAMTTDELVQISSKPALVKKALYEVSTLLHQNPRKDKPI
SSFPMVHGAQGFHPPGPPMENMIPPGKPMWSQSKTNLNGMPPALGVGGYRNQLTGFGRAD
FDYGPPPSAGEAPGDFTMKIMCSAAKIGGVIGKGGFNVKQLQQETGAGIHVEDVAPESDE
RVIRVSSLESFWDPRSRTIDAILQLQSKTSEFSDKGIVTTRLLFPSNKVGCIIGQGGQVI
NEMRRRTQADIRVLSQDEKPRCASADEELVQISGSISVAKDALVEISSRLRERCLRDANS
KVESTHVRPLPGFVPSEDFRSGDPQRSGAMGAGSSRRYEHLKGAVREYDHPSYPDLPIAT
RFSNIRSPPEMKFPDHSYGTAKGTGGYNIDEFAGSSARYQDPRSIGPGFIDDIRGTSDRM
NAGHNVFHGSSENLNAGRPTFQGYGSPAGQSSNIHQGAYHQNYAAQQSAYQSYPAKGGYP
SGSPSQLPYQNPNPHQAPYQNINSQQHQHQQAPPPYQNMAAQGSYHY
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatacaaaagaaattctctcaagcaacgctcgaacccccaattcaagaggaag
ggaggcagtaaaaatgcaaagttgaatttttctagtcatgaacggtcatctgaaaattct
cagagttcagatactacctattgtatactttgtcaatccaaaaaagttggtagcgtaatt
ggaaaaggtggtagcataatcaaagccttgagagaggaaactcaagcaaagattacagtt
gctgacagtgttcctggttctgatgatagaatagtaatcatctctagtccgtctacaaaa
ctagctaggagacagaataatgacaaaaacaatgataatccagagacaaaggaagagaat
tattccatggagccacattgtgccgcgcaagatgctctgttaaaagttcacaataggatt
gttgaggaagacttgctgggagtacaaaatgaggataagagtgaagctgtaataatcacg
cgtctccttgttccgaacaatttggttggatgccttttaggaagaaaaggcgatgttatt
cagaaattgcgaagtgagactggggctagcattcgtgtcctttctgctgagcatttgccc
gcttgtgctatgaccactgatgaattggtccaaatctcaagcaaacctgctttagtgaaa
aaagccttgtatgaagtatcaactctgttgcatcagaatcctcgaaaagacaaacctatc
tcgagttttcctatggtacatggtgctcaaggttttcacccccctggtcctcccatggaa
aatatgattcctccaggaaaaccaatgtggtctcaaagtaaaactaatttaaatggtatg
ccgcctgcattaggggtgggaggctataggaaccagcttactggatttggccgtgcagat
tttgattatggtcctcccccaagtgctggtgaagctccaggtgatttcaccatgaaaatt
atgtgctcagctgcaaaaattggtggtgttataggcaagggaggcttcaatgtaaaacaa
ctgcagcaggaaacaggagcgggtatacatgttgaggatgtcgcacctgaatctgatgaa
agagttattcgtgtctcctctttggagtctttttgggatcccagatcacgaactattgat
gccattctccaacttcaaagtaaaacaagtgaattttctgacaaaggaattgtcactacg
aggcttcttttcccctcaaataaggttggctgcattattggacaaggaggacaggttatc
aatgagatgagaaggagaacacaggcggatattcgtgttctttcccaggacgaaaaaccc
agatgcgcatctgcagatgaagagcttgtgcagatatctggaagcatcagtgttgcaaaa
gatgccttggttgagatttcttcaaggctcagagaaagatgccttagggatgcaaatagt
aaagtggagtctactcatgttaggccacttcctggatttgttccttcagaggattttcga
agtggagacccacaacgttcaggtgcgatgggggctggtagctctagaagatatgaacat
ttgaagggtgctgttcgtgaatatgaccatccaagttatccagatcttcccattgccact
agattctcaaatatccgtagtcccccagagatgaagtttccagaccattcttatggtact
gcaaaaggaacaggagggtacaatattgatgagtttgctggaagtagtgcaagatatcag
gatcctcgttctattggacctggattcattgatgatattcggggcacttcagatcgtatg
aatgctgggcacaatgtttttcatgggtcctccgagaacttgaatgctgggcggcctact
ttccaaggatacgggtctcctgctggacagagcagtaatattcatcaaggcgcttaccac
cagaattatgctgctcaacaaagtgcttatcaaagttatccagctaaaggtggttaccct
agtggtagtccttcccaattgccttaccagaaccctaatcctcatcaagctccatatcaa
aacatcaactcgcagcagcaccaacaccagcaggcgccaccaccataccagaatatggct
gcacaaggctcctaccattattga
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