Solanum pennellii: 107015372
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Entry
107015372 CDS
T04130
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107015372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107015372
Spliceosome [BR:
spen03041
]
Common components
Common spliceosomal components
SR proteins
107015372
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107015372
NCBI-ProteinID:
XP_015071145
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Position
1:complement(100426842..100434812)
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AA seq
287 aa
AA seq
DB search
MGRLSRTIYVGNLPGDIREREVEDLFYKYGPIVEIDLKVPPRPPGYAFVEFEDPRDADDA
IRGRDGYDFDGHRLRVELAHGGRGSSSYDRHSSYSSASRSGLSRRSDYRVLVSGLPSSAS
WQDLKDHMRRAGDVCFSQVFRDRDGMRGIVDYTNYDDMRYAIKKLDDSLFRNQFSRAYIR
VDKYDKRHSYSRSPSPYNSRSRSYSRSRSPRRSYSSQSRSVSPRGKYSRRSVSVSPSRAF
SPARSLSRSLSRSRSPLSPPPRWRHGRSPSRSRSRSQSYSRSSGISE
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtctaagtcggactatctacgttggaaatcttcctggtgatattcgggagaga
gaagtagaagatttgttttacaagtatggtcccattgtggaaattgatttgaaagttcca
cctagaccacctggttatgcgttcgtagagtttgaagatcctcgtgatgctgatgatgcc
atccgtgggcgtgatggctatgactttgacgggcatcgcttgcgagttgaacttgcacat
ggtgggcgagggtcatcatcatatgatcgccacagtagttacagtagtgcgagtcgcagt
ggactttctaggcgctctgactatcgcgtattggtctctggactaccgtcttctgcttca
tggcaagacttgaaggatcatatgcgacgagctggagatgtctgcttctctcaagttttc
cgagatcgtgatggtatgagagggattgtggactataccaactatgatgatatgagatac
gcgataaagaaacttgatgactctctgtttcgcaatcaattctctcgagcatatattagg
gtggacaagtatgataagaggcatagctattccaggagtccaagtccatacaattctaga
agcagaagttactcaagaagtaggagtcctcgacgaagctacagcagccagagcagaagt
gtatctcctaggggtaaatactctcgtcgctctgtgtctgtctcaccctcaagggctttt
tcccctgctcgctctctttcaagatctctatcaagatccagatctccactttcacctccg
cctcgttggaggcatggaaggagcccgagcaggagcaggagcaggagccaatcgtattct
cgctcttcggggatatcggaatga
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