Streptomyces peucetius subsp. caesius: CGZ69_02765
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Entry
CGZ69_02765 CDS
T07792
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
speu
Streptomyces peucetius subsp. caesius
Pathway
speu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
speu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CGZ69_02765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
speu03400
]
CGZ69_02765
Enzymes [BR:
speu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CGZ69_02765
DNA repair and recombination proteins [BR:
speu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CGZ69_02765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ATW52396
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All DBs
Position
complement(596303..597199)
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AA seq
298 aa
AA seq
DB search
MRAGGRTVPIQRPDKVLFPGDGITKADLADYYRAIAPHMLPHLRGRPLMLERHPDGIDGP
RFMQKNTPDTYPDWVRRVEVDKADGTVCHTVCDNTATLIHLVDQACITFHRWQSRTGRLE
RPDRLVFDLDPSGDSAEDFETVRRAARQLGELLDDLRLTSMLMTTGSRGLHVIVPLTGDT
DFDGTRSFAQEIADILAARDPDRLTTAVRKQARGDRLYVDVQRNGYAQTAVSPYSVRARP
GAPVATPISWDQLMDPDVGPRRWTVADALDQAATRPWGDALGGRRALGPAGRRLAALR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atacgggcgggcgggcggaccgtccctatccagcggccggacaaggtgctcttccccggc
gacgggatcaccaaggcggacctcgccgactactaccgggccatcgcgccccacatgctg
ccccatctgcgcggccggccgctgatgctcgaacggcaccccgacggcatcgacggcccc
cgcttcatgcagaagaacaccccggacacctacccggactgggtgcgcagagtggaggtc
gacaaggccgacggcaccgtgtgccacacggtgtgcgacaacaccgccaccctgattcac
ctcgtcgaccaggcgtgcatcaccttccaccgctggcagtcacgcaccggccggctggag
cggcccgaccggctggtgttcgacctcgacccctcgggcgactcggcggaggatttcgag
acggtacgccgggccgcgcggcaactcggcgaactcctcgacgacctgcggctcacatcc
atgctgatgaccaccggttcccgcggactccatgtgatcgtcccgctgacgggcgacacg
gacttcgacgggacgcgttccttcgcccaggagattgcggacatccttgcggcgcgtgac
ccggaccggctgaccaccgcggtgcgcaaacaggcccgcggcgaccgcctctacgtggac
gtgcagcgcaacgggtacgcgcagacggcggtgtccccctactcggtgcgcgccaggccc
ggggcgccggtggccacccccattagctgggaccagttgatggaccccgacgtgggcccg
cggcgctggaccgtcgccgacgccctcgaccaggccgctacccggccatggggcgacgcg
ctcggcggccggcgggcactgggcccggccggccgccggcttgccgccctgcgatag
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