Sphingobium sp. EP60837: EP837_03016
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Entry
EP837_03016 CDS
T04432
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EP837_03016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphb03400
]
EP837_03016
Enzymes [BR:
sphb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EP837_03016
DNA repair and recombination proteins [BR:
sphb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EP837_03016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANI79410
UniProt:
A0A173L0J7
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Position
2:complement(396493..399006)
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AA seq
837 aa
AA seq
DB search
MPKAQTNQAGEKLTKYRAKRDFALTPEPTGASVPSTGNGFVVQKHAATRLHYDFRLELDD
VLVSWAVTRGPSLNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWESIP
GKDPRRTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVKDEFAGGSDDLVG
THLTSIESGRTMEEIAAGKKGAKRKSAKAATALPSSPRTATRVAAKKGKATGKLPPFRPV
QLAALVDHVPPGDRWLHELKYDGYRTLLAVGGGEGRAYTRSGLDWSDRFAALIADALTLD
MSSALIDGEAVVLLPDGRTSFQALQAALKGNPRKIDYFAFDLLELNGEDLTQRPLTERKE
MLAALLGDGIGHLRYSDHIVGRGEQLFDSFCGAGLEGVISKRIDARYSGSRSGSWVKTKC
IRRQEFVIVGWTPSDKQRGFRSLLLGVNEEGTLRFAGKVGTGFTGDEIERLMALMAPLEQ
ESATVEAPRPAVRGAHWIKPKLVAEIAYIEFTDEGVLRHPSYLGLREDKKPEAVVLEVEA
PVEIVTCAPVGSGVKISNRERVIFPEGKLTKGLLADYYEAVAEVMLPWAGSRPISLVRCP
QGRDKKCFFQKHDAGSFGEAVKHVAIREKDGHEEPYLFVDTPAGLLTCVQMGTIEFHGWG
ARIEDVEKADRLVFDLDPDEGLDFKDVVSAAFHVKDVLAQMGLVTFPMVTGGKGVHVIAP
LTPAAEWPQVKDFAHRFAMALAQAEPARFTAALAKAKRTGRIFIDYLRNQRGATAVMPYS
ARSRPFAPVAAPLTWEELRDLDSPAHWHIGNGAELLKRASSKDLFHWGRADQILPDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggcgcaaaccaatcaagccggcgaaaagctgacgaaataccgcgcaaagcgc
gatttcgcgctgactccggagcccacaggcgcgagcgtgccgtccaccggtaacggcttt
gtcgtacagaaacatgccgcaaccagactccattatgatttccgcctggagctcgacgat
gtgcttgtcagctgggccgtgacacgcgggccaagccttaatcctgatgataaacgcttg
gctgtgcgcaccgaggaccatccgctcgactatgcccggttcgagggcaccatccccaaa
ggagaatatggcggcgggacggtaatgctctgggacaatggcacgtgggagtcgatcccc
ggaaaggacccgcggcggacattgcctgaaggtcatctccatttcatccttcatggccgc
cggatgcagggcgagtggatcctcttccgcctgaagccgcgcggcaaggagaagggcgag
aactggatcctccgcaaggtgaaggatgaattcgcgggtgggtcagatgacctggttggc
acgcatctcaccagcatcgaaagcggtcgcaccatggaggaaattgcagcggggaaaaag
ggggcgaagcgcaagagtgcgaaggccgccacggcacttccgagctcgcccaggacagcg
acaagggtggcggcaaaaaagggcaaagccaccggaaagctgccgcccttccgacccgtg
cagctcgctgcgctggtcgaccatgtgcccccgggcgatcgttggctgcacgagcttaaa
tatgacggttaccgcacgcttctcgcggttggcgggggtgaggggcgtgcctatacccgc
tcagggctcgattggtccgatcgctttgccgcgctgattgccgatgcgctcacactcgac
atgtccagtgccctgatcgacggtgaggcggttgtgctcctgcccgatggccgcacgagc
ttccaggctctccaggccgccctcaaaggcaatccccgaaagatcgactactttgccttt
gacctccttgaattgaacggtgaagatctcacgcagcggccgctcaccgagcggaaggag
atgctggccgctttgctgggggatggtattggtcacctgcgctattccgatcatattgtc
gggcgcggcgagcagttgttcgacagcttttgcggcgcaggcctcgagggcgtcatctcc
aagcggattgacgctcgctactcggggtcccggtcaggcagttgggtcaagaccaagtgc
atccggcgccaggaatttgtgatcgtcggctggacgccctcggacaagcagcgcggattt
cgctcgctgcttctcggagtgaatgaagaaggcacacttcgctttgccggcaaggtcggc
acaggatttacaggcgacgagatcgaacgtctcatggcattgatggcgcccctcgagcag
gagagcgctaccgtggaggcgccgcgcccagctgtccgcggcgcgcactggattaagcca
aagttggtcgccgaaattgcctatatcgaatttacagatgaaggggtgctgcggcatccg
agctatcttggcctgagagaggacaagaagcccgaggccgttgtccttgaggttgaggcg
ccggtagagatcgtcacctgcgcgccggtcggcagcggcgtcaaaatcagcaatcgcgag
cgggtgatctttccagagggcaagctcaccaaagggctgctggcagattattatgaagcg
gtggcagaggtcatgttgccatgggcaggcagtcgccccatcagcctggtacgttgcccg
cagggcagggacaagaaatgctttttccagaagcatgatgccggcagcttcggggaggcg
gtcaagcatgtcgccattcgggagaaggatgggcatgaagagccctatctgttcgtcgat
acgccagcaggccttctcacctgcgtacaaatgggcacgatcgagtttcatggctgggga
gcccggattgaggatgtcgaaaaagctgaccggctagtctttgatcttgatcccgatgaa
ggcctcgatttcaaggatgtggtctcagccgctttccatgtgaaggatgtgctggcgcag
atggggctcgtcacttttcccatggtgacgggcggcaagggcgtccatgtgattgcgccg
cttacccccgcggccgagtggccgcaggtgaaagatttcgctcaccgcttcgccatggcc
cttgcacaggccgagcccgcccgcttcaccgctgcccttgcaaaggcaaagcgcaccgga
cgcattttcatcgattatctgcgtaaccagcgcggcgcgaccgcagtcatgccgtatagt
gcacgctcacggccgttcgcgcctgtagcagcgccgctcacatgggaagaattgcgggac
ctggatagtcccgcgcattggcatatcggcaatggcgctgaactgctgaagcgcgccagc
tcgaaggacctttttcattggggcagggctgatcagatccttcctgacctttga
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