KEGG   Sphingobium sp. EP60837: EP837_03016
Entry
EP837_03016       CDS       T04432                                 
Name
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphb  Sphingobium sp. EP60837
Pathway
sphb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EP837_03016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphb03400]
    EP837_03016
Enzymes [BR:sphb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EP837_03016
DNA repair and recombination proteins [BR:sphb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EP837_03016
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2 mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ANI79410
UniProt: A0A173L0J7
LinkDB
Position
2:complement(396493..399006)
AA seq 837 aa
MPKAQTNQAGEKLTKYRAKRDFALTPEPTGASVPSTGNGFVVQKHAATRLHYDFRLELDD
VLVSWAVTRGPSLNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWESIP
GKDPRRTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVKDEFAGGSDDLVG
THLTSIESGRTMEEIAAGKKGAKRKSAKAATALPSSPRTATRVAAKKGKATGKLPPFRPV
QLAALVDHVPPGDRWLHELKYDGYRTLLAVGGGEGRAYTRSGLDWSDRFAALIADALTLD
MSSALIDGEAVVLLPDGRTSFQALQAALKGNPRKIDYFAFDLLELNGEDLTQRPLTERKE
MLAALLGDGIGHLRYSDHIVGRGEQLFDSFCGAGLEGVISKRIDARYSGSRSGSWVKTKC
IRRQEFVIVGWTPSDKQRGFRSLLLGVNEEGTLRFAGKVGTGFTGDEIERLMALMAPLEQ
ESATVEAPRPAVRGAHWIKPKLVAEIAYIEFTDEGVLRHPSYLGLREDKKPEAVVLEVEA
PVEIVTCAPVGSGVKISNRERVIFPEGKLTKGLLADYYEAVAEVMLPWAGSRPISLVRCP
QGRDKKCFFQKHDAGSFGEAVKHVAIREKDGHEEPYLFVDTPAGLLTCVQMGTIEFHGWG
ARIEDVEKADRLVFDLDPDEGLDFKDVVSAAFHVKDVLAQMGLVTFPMVTGGKGVHVIAP
LTPAAEWPQVKDFAHRFAMALAQAEPARFTAALAKAKRTGRIFIDYLRNQRGATAVMPYS
ARSRPFAPVAAPLTWEELRDLDSPAHWHIGNGAELLKRASSKDLFHWGRADQILPDL
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgccaaaggcgcaaaccaatcaagccggcgaaaagctgacgaaataccgcgcaaagcgc
gatttcgcgctgactccggagcccacaggcgcgagcgtgccgtccaccggtaacggcttt
gtcgtacagaaacatgccgcaaccagactccattatgatttccgcctggagctcgacgat
gtgcttgtcagctgggccgtgacacgcgggccaagccttaatcctgatgataaacgcttg
gctgtgcgcaccgaggaccatccgctcgactatgcccggttcgagggcaccatccccaaa
ggagaatatggcggcgggacggtaatgctctgggacaatggcacgtgggagtcgatcccc
ggaaaggacccgcggcggacattgcctgaaggtcatctccatttcatccttcatggccgc
cggatgcagggcgagtggatcctcttccgcctgaagccgcgcggcaaggagaagggcgag
aactggatcctccgcaaggtgaaggatgaattcgcgggtgggtcagatgacctggttggc
acgcatctcaccagcatcgaaagcggtcgcaccatggaggaaattgcagcggggaaaaag
ggggcgaagcgcaagagtgcgaaggccgccacggcacttccgagctcgcccaggacagcg
acaagggtggcggcaaaaaagggcaaagccaccggaaagctgccgcccttccgacccgtg
cagctcgctgcgctggtcgaccatgtgcccccgggcgatcgttggctgcacgagcttaaa
tatgacggttaccgcacgcttctcgcggttggcgggggtgaggggcgtgcctatacccgc
tcagggctcgattggtccgatcgctttgccgcgctgattgccgatgcgctcacactcgac
atgtccagtgccctgatcgacggtgaggcggttgtgctcctgcccgatggccgcacgagc
ttccaggctctccaggccgccctcaaaggcaatccccgaaagatcgactactttgccttt
gacctccttgaattgaacggtgaagatctcacgcagcggccgctcaccgagcggaaggag
atgctggccgctttgctgggggatggtattggtcacctgcgctattccgatcatattgtc
gggcgcggcgagcagttgttcgacagcttttgcggcgcaggcctcgagggcgtcatctcc
aagcggattgacgctcgctactcggggtcccggtcaggcagttgggtcaagaccaagtgc
atccggcgccaggaatttgtgatcgtcggctggacgccctcggacaagcagcgcggattt
cgctcgctgcttctcggagtgaatgaagaaggcacacttcgctttgccggcaaggtcggc
acaggatttacaggcgacgagatcgaacgtctcatggcattgatggcgcccctcgagcag
gagagcgctaccgtggaggcgccgcgcccagctgtccgcggcgcgcactggattaagcca
aagttggtcgccgaaattgcctatatcgaatttacagatgaaggggtgctgcggcatccg
agctatcttggcctgagagaggacaagaagcccgaggccgttgtccttgaggttgaggcg
ccggtagagatcgtcacctgcgcgccggtcggcagcggcgtcaaaatcagcaatcgcgag
cgggtgatctttccagagggcaagctcaccaaagggctgctggcagattattatgaagcg
gtggcagaggtcatgttgccatgggcaggcagtcgccccatcagcctggtacgttgcccg
cagggcagggacaagaaatgctttttccagaagcatgatgccggcagcttcggggaggcg
gtcaagcatgtcgccattcgggagaaggatgggcatgaagagccctatctgttcgtcgat
acgccagcaggccttctcacctgcgtacaaatgggcacgatcgagtttcatggctgggga
gcccggattgaggatgtcgaaaaagctgaccggctagtctttgatcttgatcccgatgaa
ggcctcgatttcaaggatgtggtctcagccgctttccatgtgaaggatgtgctggcgcag
atggggctcgtcacttttcccatggtgacgggcggcaagggcgtccatgtgattgcgccg
cttacccccgcggccgagtggccgcaggtgaaagatttcgctcaccgcttcgccatggcc
cttgcacaggccgagcccgcccgcttcaccgctgcccttgcaaaggcaaagcgcaccgga
cgcattttcatcgattatctgcgtaaccagcgcggcgcgaccgcagtcatgccgtatagt
gcacgctcacggccgttcgcgcctgtagcagcgccgctcacatgggaagaattgcgggac
ctggatagtcccgcgcattggcatatcggcaatggcgctgaactgctgaagcgcgccagc
tcgaaggacctttttcattggggcagggctgatcagatccttcctgacctttga

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