Rhizorhabdus wittichii DC-6: HY78_05020
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Entry
HY78_05020 CDS
T05200
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
sphd
Rhizorhabdus wittichii DC-6
Pathway
sphd01501
beta-Lactam resistance
sphd01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sphd00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
HY78_05020
01503 Cationic antimicrobial peptide (CAMP) resistance
HY78_05020
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sphd02000
]
HY78_05020
01504 Antimicrobial resistance genes [BR:
sphd01504
]
HY78_05020
Transporters [BR:
sphd02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
HY78_05020
Antimicrobial resistance genes [BR:
sphd01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
HY78_05020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
SHOCT
GDH_ACT2
Motif
Other DBs
NCBI-ProteinID:
ARR52852
LinkDB
All DBs
Position
1046578..1049724
Genome browser
AA seq
1048 aa
AA seq
DB search
MISRIFIDRPIFAWVIAIVIMLLGAGGLLSLPVSQYPNIAPPSVNIRANYPGASAETVES
NITQIIEQQLSGIDGLLYFSSSSSSAGRAQITVTFDKSVDADIAQVQVQNKVQQALPRLP
QQVQQQGLVVTKSNPDFLMVVSVYDESDRASNLDVADYLTSTLQDGIGRLPGVGDVNVFG
APYAMRIWLDPYRLASFGLTPDDVTSALQAQNAQVAAGQIGGVPSPDSQMLNAIVTSRSR
LTNVDEFKKIIVKTQTDGSKVMLQDVARVELGSESYNVVGRLNGHPGAGIAILLAPGADA
LKTSEIVRSYVDKAAERFPHGYRHVFVNDATAFIKLSIEEVVKTLFEAILLVVLVMFVFL
QSWRATLIPAVAVPVVLLGTFGVLAAAGFSINTLTLFSLVLAIGLLVDDAIVVVENVERV
MEEDPDISPREATIKSMAEINTALIAIALVLSAVFLPMAFFGGSTGVIYRQFSITIVASM
ALSVFVALVLSPALAATVLKRPDKEKRAAQGGIVGRAYHQGDRFNEWFKRMSDRYRDTVS
KLFGHMRTAMIVFVLVIAALVLVFFRLPTGFVPTEDQGIAQTQYTLAPGATMSRTVAVAR
EIEAYLAKNEPHNILTFYTVSGTSAAGQGQNAGRGFIALAPWDERKGPENSSEAIARRAT
QALSKVRDAQIFILTPPSIPGLGQSTGFSMELLNTGDLSREEFKQRRDQLLALASADPEL
ANVRLNTLEDTPTLAVDIDSEKVGALGVSQSAVNQTLAAAWGGLYVNDFVDRGRVKRVFV
QGDAPFRSRPEDLAAWHVRSASGQMVPFSAFSTIHWAQTPNLLTRFNGVSNFTFQGQGAP
GKSSGDAMKRITELAAQVPGVSVDWSGLSYQERLSGGQAPILYGLSVLVVFLCLAALYES
WSIPIAVVMVIPLGLIGATLAVLARGLENDVFFQVGLVTTMGLSAKNAILIVEFAVMAEN
DGKTPLQAAIEGARIRLRPILMTSFAFMFGVLPLAISTGAGAKARVAIGTAVLGGMFTAT
LLALFFVPLFFVLVRKLFPRKRNGDVAA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgatatcgcgcatcttcatcgatcgcccgatcttcgcctgggtgatcgcgatcgtgatc
atgctgctcggcgcgggcgggctgctcagcctgccggtgtcgcaatatccgaacatcgct
ccgccatcggtcaacatccgggccaattatcccggcgcatcggccgagacggtcgaatcg
aacatcacccagatcatcgagcagcagctctcgggcatcgacgggctgctctatttctcg
tcctcgtccagttcggcgggccgggcccagatcaccgtcaccttcgacaagagcgtcgac
gcggacatcgcccaggtccaggtgcagaacaaggtgcagcaggccctgccgcgcctgccg
cagcaggtccagcagcaagggctggtcgtcaccaagtcgaaccccgacttcctgatggtg
gtgtcggtctatgacgagagcgaccgggcgagcaatctcgacgtcgccgactatctgacc
tcgaccctccaggacggcatcggccgcctgcccggcgtcggcgacgtcaacgtgttcggc
gcgccctatgcgatgcgcatctggctcgacccgtaccggctggccagcttcgggctgacc
cccgacgacgtgacgtccgcgctgcaggcgcagaacgcgcaggtcgcggcgggacagatc
ggcggcgtgccgtcgcccgactcgcagatgctcaacgcgatcgtcacctcgcggtcgcgg
ctgaccaacgtcgacgagttcaagaagatcatcgtcaagacgcagaccgacgggtcgaag
gtcatgctgcaggacgtcgcgcgggtcgagctgggcagcgaatcctacaatgtcgtcggc
cgcctcaacggccatccgggggccggcatcgcgatcctcctcgcccccggcgcggacgcg
ctcaagacgtccgagatcgtccggagctatgtcgacaaggcggccgagcgcttcccgcac
ggctatcgccacgtcttcgtcaatgacgcgaccgccttcatcaagctgtcgatcgaggag
gtggtcaagacgctgttcgaggcgatcctgctggtcgtcctcgtcatgttcgtcttcctg
cagagctggcgggcgacgctgattcccgcggtggcggtcccggtcgtgctgctcggcacc
ttcggcgtgctggcggcggcgggcttctcgatcaacacgctgacattgttcagcctcgtc
ctcgccatcggcctgctcgtcgacgacgccatcgtcgtggtcgagaatgtcgagcgcgtg
atggaggaagaccccgacatcagcccgcgcgaagcgacgatcaagtcgatggcggagatc
aacaccgcgctgatcgcgatcgcgctggtgctgtcggcggtgttcctgccgatggccttc
ttcggcggttcgaccggcgtgatctaccgccagttctcgatcaccatcgtcgcgtcgatg
gcgctgtcggtgttcgtcgcgctggtcctgtcgccggcgctggcggcgacggtgctcaag
cgccccgacaaggagaagcgcgccgcgcaaggcggcatcgtcgggcgcgcctatcatcag
ggcgatcgcttcaacgaatggttcaagcgcatgtcggaccgctatcgcgacaccgtctcg
aagctgttcggccatatgcggaccgcgatgatcgtcttcgtgctggtgatcgcggcgctg
gtgctggtcttcttccgcctgcccaccggcttcgtgccgaccgaggaccaggggatcgcc
cagacccaatatacgctggcgcccggcgcgacgatgagccggaccgtcgcggtcgcgcgc
gagatcgaggcctatctggccaagaacgagccgcacaacatcctgaccttctacaccgtc
agcggcaccagcgccgccggccagggccagaatgccggccgcggcttcatcgcgctcgcc
ccctgggacgaacgcaaggggcccgagaacagttcggaggccatcgcccgccgcgccacc
caggcgctgtccaaggtccgcgacgcgcagatcttcatcctgacgccgccgtcgatcccc
ggcctgggtcagtcgaccggcttctcgatggagctgctcaacaccggcgatctcagccgc
gaggagttcaagcagcgccgcgaccagttgctcgcgctggcgtccgccgaccccgagctt
gccaatgtccgcctcaacacgctcgaagacacgccgacgctcgccgtcgacatcgattcg
gagaaggtcggcgccctcggcgtcagccagtccgcggtcaaccagacgctcgcggcggcg
tggggcggattatacgtcaacgatttcgtcgaccgcggccgcgtcaagcgcgtcttcgtc
cagggcgacgctccgttccgcagccggccggaggaccttgccgcctggcacgtccgctcc
gcatcggggcagatggtgcccttctcggccttctccacgatccattgggcgcagaccccg
aatctgctgacccgcttcaacggcgtgtcgaacttcaccttccagggacagggcgcgccg
ggcaagagctcgggcgacgcgatgaagcggatcaccgaactggcggcgcaggttccgggg
gtctcggtcgactggtcggggctcagctatcaggaacggctgtcgggcgggcaggcaccg
atcctctatggcctgtcggtgctcgtcgtcttcctgtgcctggccgcgctctacgaaagc
tggtcgatcccgatcgcggtcgtcatggtcatcccgctcggcctgatcggcgcgacgctg
gcggtgctggcgcgcgggctggagaatgacgtcttcttccaggtcggcctcgtcaccacc
atggggttgagcgccaagaacgcgatcctgatcgtcgaattcgcggtgatggcggagaat
gacggcaagacgccgttgcaggcggcgatcgagggcgcgcgcatccgcctgcgcccgatc
ctgatgaccagcttcgccttcatgttcggcgtgctgccgctcgccatctcgaccggcgcg
ggcgccaaggcgcgcgtcgcgatcggcaccgccgtgctgggcggcatgttcaccgccacc
ctgctcgcgctgttcttcgtgccgctgttcttcgtgctggtccgcaagctcttcccgcgc
aagcgcaacggggatgtcgccgcatga
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