Sphingomonas sp. FARSPH: DM480_07540
Help
Entry
DM480_07540 CDS
T05685
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf02020
Two-component system
sphf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DM480_07540 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DM480_07540 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphf03021
]
DM480_07540 (rpoN)
Transcription machinery [BR:
sphf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DM480_07540 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
AXJ95390
UniProt:
A0A345WNY8
LinkDB
All DBs
Position
complement(1538237..1539718)
Genome browser
AA seq
493 aa
AA seq
DB search
MSLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIEAFIAEEIEKNPLLEAPQTDEIVRP
ERPEADEPAGADALVTGAAAADPLDVDYATESHQQDSVADGGGGFDGALSMNGSAPGSGG
PGGEDAPDLDSFAAADISLADHLLAQAGAVVDAADWFVAQHLIDQLDEAGYLSAPLLDIA
NRLGIPRARVERVLAQVQTLDPTGVGARDLAECLALQAKEADRYDPCMARLIDNLDLLAR
GELARLKRMCGVDDEDMADMIRELRGYDPKPGCRFGGEPAPAVTPDLFVAKTKAGWGIEL
NSATLPRVLVNRRYYHELSHGPQDKASKAWLTDALASANWLIKALDQRQRTIIKVATEIV
KQQEAFFLNGVAHLKPMTLAKVAEAIEMHESTVSRVTSNKYLSCARGVFELKYFFTSAIQ
AADGGDAVSAEAVKSAIRQLIANEGAKILSDDTLVELLQAKGFDIARRTVAKYREAMGIG
SSVQRRRAKALGG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccccgcgcctcgacctgcgccagtcgcaatctttggtgatgacgccgcag
ctgcagcaggcgatcaagctgctcgcgctgtccaacctcgagatcgaggcgttcatcgcc
gaggagatcgaaaagaacccgctgctcgaggcgccgcagaccgacgagatcgtccgtccc
gaacgccccgaggccgacgagcccgcgggcgccgacgcgctcgtcaccggcgcggccgcc
gccgacccgctcgacgtcgactatgcgaccgaaagccatcagcaggacagcgtcgccgat
ggcggggggggcttcgacggcgcgctgtcgatgaacggatcggcgccgggcagcggcggc
ccgggcggcgaggatgccccagacctcgacagcttcgccgccgccgacatcagcctcgcc
gatcacctcctggcgcaggcgggcgccgtcgtcgatgccgccgactggttcgtcgcgcag
catctgatcgaccagctcgacgaggcgggttatctctccgccccgctgctcgacatcgcc
aaccggctcggcatcccgcgcgcgcgcgtcgagcgcgtgctcgcgcaggtgcagacgctc
gaccccaccggcgtcggcgcgcgcgaccttgccgaatgcctcgcgttgcaggcgaaggag
gcggaccgctacgacccgtgcatggcgcggctgatcgacaatctcgacctgctcgcgcgc
ggcgaactggcgcgattgaagcggatgtgcggcgtcgacgacgaggatatggcggacatg
atccgcgagctgcgcggttacgaccccaagcccggctgccgcttcggcggcgagcccgcg
cccgcggtgacgcccgacctgttcgtcgccaaaaccaaggcgggctggggcatcgagctc
aacagcgcgacgctgccgcgcgtgctcgtcaaccgccgctattaccacgaactcagccac
ggtccgcaggacaaggcatccaaagcgtggctgaccgatgcgctcgcgagcgccaactgg
ctcatcaaggcgctcgaccagcgccagcgcacgatcatcaaggtcgcgaccgagatcgtg
aagcagcaggaggcgttcttcctgaacggcgtcgcgcacctcaagccgatgacgctcgcc
aaggtcgcagaggcgatcgagatgcacgaatcgaccgtcagccgggtgacgagcaacaaa
tatctaagctgcgcgcgcggcgtgttcgagctgaagtatttcttcacgagtgcgatccag
gcggctgacggcggcgacgcggtgtccgccgaagcggtgaaaagcgccatccgccagctg
atcgcgaacgagggagcaaagatcctgtccgacgacacgctcgtcgaactgcttcaggcc
aagggcttcgacatcgcccgccgcacggtggcgaaataccgcgaggcgatgggcatcggc
agctcggtgcaacggcggcgggcaaaggcattgggggggtag
DBGET
integrated database retrieval system
