Sphingomonas hengshuiensis: TS85_02585
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Entry
TS85_02585 CDS
T03848
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TS85_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphi03019
]
TS85_02585
03016 Transfer RNA biogenesis [BR:
sphi03016
]
TS85_02585
Enzymes [BR:
sphi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TS85_02585
Messenger RNA biogenesis [BR:
sphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TS85_02585
Transfer RNA biogenesis [BR:
sphi03016
]
Prokaryotic type
tRNA degradation factors
TS85_02585
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
FaeA
Gag_p12
Motif
Other DBs
NCBI-ProteinID:
AJP70947
UniProt:
A0A7U5BES8
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All DBs
Position
546466..548805
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AA seq
779 aa
AA seq
DB search
MARDKQKPGLPSREQILSFISSSSTPAGKREIAKAFGLHAQDKIALKALLRDMTDEGLID
AAPGRAFHKMGGVPKVTVLRVTDVEGDTVWAVPERWEAEGIPVPRLRVRERGKRSALGPG
DRILARTEEAGNGWIAHPLKQLAKGEEQLLGVVHEEGGRLYLQGIEKKERHSFPISDRNG
AEPGDLVLAEKAGRPPRIFARVTERLGDPFAPRSFSLIAIHKHGIPNVFSPELIDEAERV
SKQPLGTDREDLRHIPIVAIDPADARDHDDAVWATPDDDPKNEGGWKAVVAIADVSFYVR
PGSILDREARKRGNSVYFPDRVVPMLPEILSAEVCSLKEGEDRAALACHLQVGRNGELKS
WRFTRAVVRIVANIAYEDAQAAMDARVSPSAQREGQGEGTSSAEVPGDGPSPDPSRKREG
SVSPALVESTLVPLWDCWRALYKARQKREPLDLDLPERRIVLDEKGRILSVAPRERLDAH
KLIEDYMVAANVAAAKALEAKKTPVMYRVHEPPAREKLVALKDYLKTFDMEFALGQVIRP
AVFNNILAKVAEADHKAEIMQQVLRSQTQAYYGPENAGHFGLSLGSYAHFTSPIRRYADL
LVHRGLVSAYGLGPGGLTAEEATTMDRIGQSISQYERRAMEAERDTVDRYVAAYLATHVG
EVMEARITGVQNFGFFATIEGIGGDGLVPVRDLGAEYFRYDEASQRLVGEASGEFFALGQ
RLPLRLAEANPVNGALRFELPDGKGSASNSAGRGERPGGKRVIKHRGRPANIRHQGRKR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggccagagataaacagaaaccggggctacccagccgcgaacagatactgagctttatc
agttcatcctccacgcccgccggcaagcgcgagatagccaaggcgttcgggctgcacgcg
caggacaagatcgcgctcaaggcgctgttgcgcgacatgaccgacgaggggctgatcgac
gcagcgcccggccgcgcctttcacaagatgggcggggtgcccaaggtgacggtgctgcgc
gtcaccgatgtcgagggcgataccgtctgggccgtgcccgagcgctgggaggcggagggc
attccggtgcctcggctgcgcgtccgcgagcgcggcaagcgcagcgcgctggggccgggc
gaccgcatcctggcgcgcaccgaggaagcgggcaatggctggatcgcgcacccgctcaag
cagcttgccaagggcgaggaacagttgctcggcgtcgtccatgaagagggcgggcggctg
tacctccagggcatcgagaagaaggagcgccacagcttcccgatctccgaccgcaacggc
gccgagccgggcgatctggtgctcgcggagaaggccgggcgcccgccgcgcatcttcgcg
cgggtcaccgagcggctgggcgatccgttcgcgccgcgcagcttctcgctgatcgcgatc
cacaagcatggcatccccaacgtcttctcgcccgagttgatcgacgaggccgagcgcgtg
tcgaagcagcctttgggcaccgatcgcgaggacctccgccacatcccgatcgtggcgatc
gaccccgccgatgcgcgcgaccatgacgatgcggtgtgggcgacgcccgacgatgatccg
aagaacgaaggcggctggaaggcggtggtcgcgatcgccgatgtaagcttctatgtccgc
cccggatcgatcctcgaccgcgaggcgcgcaagcgcggcaattcggtctacttccccgac
cgcgtcgtgccgatgctgcccgaaatcctgtccgccgaggtgtgttcactgaaggaaggc
gaggaccgcgcggcgctggcctgccaccttcaggtcggcaggaatggcgagctgaaaagc
tggcgcttcacgcgcgcggtggtgcggatcgtggcgaacatcgcctatgaagacgctcag
gctgcgatggatgcacgggtttccccttccgcgcagcgggaggggcaaggggagggcact
tcttctgccgaggtgccgggggatggcccctcccccgacccctcccgcaagcgggagggg
agcgttagtccggcgctggtggagtcgacgctggtgcccctctgggactgttggcgcgcg
ctgtacaaggcgcggcagaagcgtgagccgctcgacctcgatttgcccgagcggcggatt
gtgctcgacgagaagggacgcatcctctcggtcgcgccgcgcgagcggctggacgcgcac
aagctgatcgaggattatatggtcgcggccaatgtcgcggcggccaaggcattggaggcc
aagaagactccagtcatgtaccgcgttcacgagccgcccgcgcgcgagaagctggtcgcg
ctcaaggactatctcaagaccttcgacatggagttcgcgctggggcaggtgatccgtccg
gcggtgttcaacaacatcctggccaaggtcgcggaggccgaccacaaggccgagatcatg
cagcaggtgctgcgcagccagacccaggcctattatggccctgaaaatgcaggacatttc
gggctttcgctggggagttatgcgcatttcacttcgccgatccgccgctatgccgatctg
ctcgtccatcgcggactggtctcggcctatgggctggggccgggcgggttgaccgccgag
gaagccaccacgatggaccgaatcgggcaaagcatcagccaatatgaacgccgcgcgatg
gaggccgagcgtgacaccgtcgatcgctatgtcgccgcctatctggccacgcatgtcggc
gaagtgatggaggcgcggatcaccggcgtccagaatttcggctttttcgcgacgatcgag
ggcatcggcggcgacgggctggtgccggtgcgcgatctgggcgccgaatatttccgttac
gacgaggccagccagcggctggtgggcgaggcgagcggcgagttcttcgcgctcggccag
cggctgccgctgcggctggcggaggcgaacccggtcaacggcgcgctgcgcttcgaacta
cccgacggcaagggcagcgcgagcaacagcgcgggccggggcgaacggcccggcggcaag
cgtgtgatcaagcatcgcgggcgtccggcgaacatccggcatcaggggcgcaagcgatag
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