Sphingopyxis fribergensis: SKP52_00385
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Entry
SKP52_00385 CDS
T03542
Name
(GenBank) conserved repeat domain protein
KO
K20276
large repetitive protein
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SKP52_00385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SdrD_B
DUF11
SpaA
CarboxypepD_reg
CarbopepD_reg_2
EMC7_beta-sandw
TRAP_beta
fn3_3
Cna_B
Motif
Other DBs
NCBI-ProteinID:
AJA07027
UniProt:
A0A0A7PGF1
LinkDB
All DBs
Position
90380..98809
Genome browser
AA seq
2809 aa
AA seq
DB search
MWRVARFVWLAIAMLVAAPAWAADLQVSAYTWAPDPVPNGAATEFTVRLTNNGPGSVSDT
VVSIAVSNRFRVDPGNFPSYCSLSGATGSQTLTCNLDAFAVGDRSFTYSATAIAVGSANT
VATVSSATAGDTNAANDVLIVTPAVQNGADLSLVKNDGLSGGSIVAGGIISYQLTASNAG
PDATAAVRVVDNLPPASDFQFLSAGGSNWNCSRSGTTVTCLYSGTAATGALPPITIAGRV
IRQSSGTITNTAFAELTVPTVLDPNGNNNAAPAVVTTILEGTDLRAAKAFSAATIVEGTS
ANVTLTIFNDGPQSVTGATISDTFASNFAIGALPAGCSATGQTVTCNAGTLASGANRAFV
IPVTANTATAGVQNNVATVTGPPGLAEPDTANNSATAAFQIVAPTADLSITKGKTPNPVQ
AGQNMTSTITVRNNGPGVLTYGPGNPLRVTDSVSVDEAYVSANAAWNCGQAGTTITCDTA
NAGTLAVGATITLSLVTQAGPTANVNLTNTACTGGTGGSQATPADGNAANDCAGASARAT
TVTTDLAVVKEVSLSPAGPWSQTPALSIPAATQSFYIRLTASNPGSQTAGTVVVSDVLPN
RLNTGGFVTGVAQESATSGSVAYTASNGEIRWTLSNLAPAASETAIVRVTRPFTEGAQTN
TARISSPDTIDTNSANNQSNALYNVEPLADVVAVAKTIAPNPVQVGTIATYRLDIRNFGA
NPAANVVVSDTIDPTRFELVGDPTTTKPGAICSRNDASGEISCNLGTYGRGELFQVSQQV
RPRFPFGGATSGFPISHTNTASVTTTTTESDTTNNSTSLVHDVTAPGFDLAISKQEPGPE
FDPRRFGDELVYDVRISNFGPSRATNVVITDIPQPPAGYTMTLAGFQTNQVPANGGLTLY
TPPAPDCVQSGANVVCRLHGTQPALNYLDPLRQTIFRLRFTPAGPAPSTSLTFTNGVNVI
ALEQDNTSVNQADTQLANNSAVQTTTVLPSVDLETVSKTRVSASPAGINEPVEYAIVVRN
NGISPIAQIRVTDDLSAGLVFAPPAPTATAAGSASVGAINCSGTTSVLCILDGSFPPDGS
PVTIRLFARAAYPFSGPLGSDLTNSATVAPGQDSGGQELARDAEPTNNSKTAAVQIAASS
IAGSVYADDNLDDAPQAGEMLAGVTMTISGTDAFGNAIAARTTTTDASGAFLFDRLPPGT
YTIVETQPAGLLDYRETAGSAGGTVNNAAFGSGAATNSIASISLPVDTDATGYLFQEVRA
ASLSGIIFRDADNDGVIDPGETGVGPADFPATPQIRLSGNDYTGDPVNLTATVDASGNYS
FADLPPSDAAGYIVTQLVQPNGLSDGLDSNGAGNIVAGSAGRAAPEDIAVGPVGSGAALT
GRNFGEIPSSTLSGIVYLDPNENAARDAGEQTGLAGAIIRLTGTNDVGQSVDCSITTSAT
GAYRFPWDGDPDPACRVLRPGTYTVAQTPPPGLTPSGAFIGSMGGSAGGVSGTNVPSPGT
ANTTVAGVVIAAGASAERYDFGATGEGLSGYVYVDRNGNGTRDEGEPGIPGVMITLSGET
GGNQDVCTIATCTATTDASGNFIFINVPGSSAAGYTLTEQAQSTAPLSNFADGVDAPGTV
EGSPRGTAGNDVISGIVLGAGELGINNAFGERGSSLAGSVYIDGNDDGVRQGGETALPGV
MVTLSGSSASGEDICALRAALDPALGCITTTGPDGSYRFDDLPAGTYTLTEDQPSAYADG
REAAGTPAGTIDNGSFGGTPATNRVASIALGNGVAGTGYDFGERAITISGRVYLDPERDG
ADNEETGIPGVTITLRQGGTVIATTTTGPDGSYRFENLPAGSYTVEETQPAGYGSSTPNS
QSVNVSAGQNQSIDFGDTNSSLAGSVFVDSNDDGVRQPGERGIEGVAVRLTGTDEAGAAV
DRTLTTDADGNYRFGDVLAGTYTLAETQPVGFGDGRESVGTSGGSVANDSISAIALAAGI
DATDYVFGEVGQGQGGTVYVDDNRNGVQDPGEPGIPGVIVELQRPDGSVVQTVTTGPDGR
YDFADIEAGDYVIVETQPAGYGDAAENPANRVPLTVGVGNPVTPVNFGERVGSIAGLVYN
DSNGNGQRDPNEPTIPGVTLTLNGTDARGNPVTRTAVSGPDGGYLFTGLPGGSYSIVETQ
PDGYGDGIDTPGTSGGSAAGDTISAINLTAADEATGYLFGEEGEGARVTGRVWTDDDHDR
SLDNGEAVRAGWVVELLLGDALIATTTTAADGSYAFNGVAPGTGYEIRFRNPESNALYGS
ARPNETGAPVTEGVVSASNPAGARTEGGTLTGLTLAPGADVPQQSLPLDPSGVVYDAVRR
TPVSGATVALSGPAGFDPAIHLLGGAGNVTQVTGDSGMYQYLLLPGAPAGVYTLAVTPPN
GSYNPIQPSSIIPPCAGPLNVGGTPDPLLVSIYNGAPPSGAVKTCTTGGESTAYFLSFTL
TPGVSADVVNNHIPIDPILEGAIEVTKRTPMTNVSRGGLVPYVVTARNTLAGAINGITIT
DRVPAGFRYRTGSATINGTAVEPQQSGRLLSWPNQSFAAGEEKAVQLILVVGAGVGEGEH
VNEAYAVNALVGAVVSNVADATVRIIPDPDFDCSDVIGKVFDDRNMNGVQDEGEPGLPGV
RLASARGLLITTDAEGRYHVTCPMIPNEERGSNFILKVDVRTLPTGFRMISVNPDTVRLT
RGRMATLNFGAAVGRVVRLDVNGDAFEGDAIAPAFNARIDGLLEVIAMSPSVLRIAYVAR
GEDERIIRRRLASLRDVIAAKWKQVDGRYRLIIEEETAVPAAARQGDAK
NT seq
8430 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgcgttgcgcgtttcgtctggctcgccattgcaatgctcgtcgcggcaccggcc
tgggcggccgatctgcaagtgtcggcttacacttgggctcccgaccccgtgcccaatggc
gcggcgaccgaattcacggtacgcctcaccaacaatgggccgggctccgtttcggacacg
gtggtttcgatcgctgtctccaatcgttttcgtgtcgatccaggcaattttccttcctat
tgttccctgtccggcgctaccgggtcgcagacgctgacctgcaacctcgatgcttttgca
gttggcgatcgtagtttcacctattcggcgaccgcgatcgccgtcggctcggcaaacacc
gtggccaccgtctcgagcgcaacggctggcgataccaacgccgccaacgacgtcctaatc
gttacgcccgctgttcagaacggcgcggacctttcgctggtcaagaatgatggtctgtcc
ggcggcagcatcgtagctggcggtatcatttcctatcagctgaccgccagcaatgccggc
cccgatgccaccgcggcggttcgtgtcgtcgacaatttgccgccggcctcggactttcag
ttcctctcagcgggcggtagcaactggaattgctcgcggtccggcacgacggtgacctgc
ctttactccggaaccgccgcgaccggcgcgctaccgccgatcaccatcgcgggccgcgtg
atccgccagtcgagcggcacgatcacgaacacagcatttgccgagcttacggtgcccacc
gttctcgacccgaacggcaacaataatgccgcgcccgctgtggtcacgacgatcctcgaa
ggcaccgatctcagggcggccaaggcattttcggcggcaacgatcgtcgagggcacgagc
gcgaacgtcacgctcaccatattcaacgacggcccgcaaagcgttaccggcgcgacgatc
agcgacacgttcgcgagcaatttcgcgatcggggccctgcctgcgggctgctcggcgacc
ggacagaccgtgacatgcaatgccggcacgttggcgagcggcgccaaccgcgcgttcgtg
atcccggtcaccgccaacacggcgaccgctggcgttcagaacaacgtcgcgacggtgacc
gggcctccgggccttgccgagccggatacggccaacaacagcgcgacggccgcgttccag
atcgtggcgccgaccgccgatctcagcatcacgaagggcaagacccccaacccggtccag
gcgggccagaacatgaccagcacgatcacggtccgcaacaacgggcccggcgtgctgacc
tacggtccgggcaatccgctcagggtcaccgacagcgtctcggtcgacgaggcatatgtg
tcggcgaatgcggcctggaactgcggccaggcaggcacgacgatcacttgcgatacggcc
aacgctggcacgctagcggtcggcgcgacgatcacgctttctctggtcacccaggcggga
ccaaccgcaaacgtcaatctcaccaacactgcctgcaccggcggcaccggtggctcgcag
gcgaccccggctgacggcaacgccgccaacgactgcgcgggcgcaagcgcgcgggcgacc
acggtcaccaccgacctggcagtggtcaaggaagtgtcgctcagcccggctggcccctgg
agccagactccggcgcttagcattccggcggcgacccagagcttctacattcgtctaacc
gcttccaaccctggcagccagacggccggcaccgtggtggtcagcgatgtccttccgaac
cggctcaacacgggcgggttcgtgaccggggtcgcccaggaaagcgcgaccagcggttcg
gtcgcctacacggcgtcgaacggcgagatccgctggacgctgagcaatctcgcgccggca
gcctccgagacggcaatcgtgcgcgtgacccgaccgttcacagagggagcgcagaccaac
actgctcgaatctcctcgcccgacacgatcgacacaaacagcgccaacaaccagtcaaac
gcgctctacaacgtcgagccgctggctgacgtcgttgccgtagccaagacgatcgccccc
aatccggtgcaggtgggcacgattgcgacctaccgtctcgacatccgcaactttggggca
aatcccgccgcaaatgttgtggttagcgatacaatcgacccgactcgcttcgagctggtc
ggtgatccgacgacgaccaagcctggcgcgatctgcagccgaaacgacgccagcggcgaa
atcagctgcaatctcggaacctatggccgcggcgagctctttcaggtcagtcagcaggtt
cgaccccgattcccgttcggcggtgccacctcgggctttcccatcagccacaccaatacc
gcctcggtcacgacgacgacgaccgagagcgacacgaccaacaacagtacgtcgcttgtc
catgatgtgacggcgccgggcttcgacctcgcgatcagcaagcaggagccgggccccgag
ttcgatccgcggcgctttggcgatgagctcgtctatgacgtccgcatctcgaacttcggt
ccctcccgcgcgacgaacgtcgtcatcaccgatattccccagcctccggctggttacacg
atgacgctggcaggctttcagacaaatcaggtgccggccaacggcggcctcacgctttat
acgccgcccgcgcccgattgcgtgcagtccggtgcgaacgttgtctgccggctgcacggc
acgcagccagccctcaactatctcgatccgctgcggcagacgattttcaggctgcgcttc
acgccggccggcccggcgccctcgacctcgctcaccttcaccaacggcgtgaacgtgatc
gcgctcgagcaggataatacgagcgtcaaccaggccgacacccagctcgccaacaacagc
gcggtccagacgaccacggtgctgccgtcggtcgatctcgaaaccgtatcgaagacccgc
gtcagcgcttcgcccgccgggatcaacgagcccgtcgaatatgcaatcgtcgtgcgcaac
aatggcatctcgccgatcgcacagattcgcgtcaccgatgatctttctgcgggtctggtc
ttcgcaccacccgcgccgaccgccaccgcggccggctccgcgagtgtcggcgcgatcaat
tgcagcgggacgacctctgtgctctgcatcctcgacggcagttttccgcccgacggctcg
ccggtcacgatccgcctcttcgctcgcgccgcctatccgttcagcggaccgctcggctcc
gacttgaccaatagcgcgacggtagcgccgggccaggacagcggcggccaggaactggcg
cgcgacgccgaaccgaccaacaacagcaagaccgccgcggtgcagattgctgcatcctcg
atcgcgggctcggtttatgccgacgacaatctcgacgatgcgccgcaggcgggcgagatg
ctcgccggcgtcacgatgacgatcagcggcaccgatgcgtttggcaatgcgatcgcggcg
cggaccacgaccaccgacgcgtcgggcgcattcctgttcgatcgcctgccgccgggtacc
tacacgatcgtcgaaactcagcccgccggcctgctcgactaccgcgagaccgcgggcagc
gcgggcggtacggtcaacaatgccgccttcggcagcggcgccgcgaccaattctatcgcg
agcatctcgctccccgttgataccgacgccaccggctatctgttccaggaggtgcgcgcc
gcgtccctcagtggcatcatattccgcgacgccgataacgacggcgttatcgatcccggc
gagactggggttgggccggccgacttcccggcgaccccgcaaattcgcctctccggcaat
gattacaccggcgatcccgtgaatctcacggcgacggtggacgccagcggcaattacagc
ttcgccgatttgccgccgtcggacgcggccggatatatcgtgacccagctcgtgcagccg
aacggcctttccgatggcctcgacagcaacggggccggcaatatcgtcgccggctcggcc
ggacgggccgcgcccgaggatatcgcggtcggacccgtcggctcgggtgctgctctcact
ggcaggaatttcggcgagattccgagttcgaccctgtcgggcatcgtttatctcgatccg
aacgagaatgcggcgcgcgatgcgggcgagcagaccggtctcgccggcgcgatcattcgc
ctcaccgggaccaacgatgtcggtcagtcggtcgactgctcgatcacgacctccgcgacg
ggcgcctaccgtttcccgtgggacggcgacccggatccggcctgccgcgtgttgcggccc
ggcacctacacggtagcgcagacgcctccccccgggctcaccccgagcggtgcattcatc
ggttcgatgggcggcagcgcgggcggcgtcagcggtaccaatgtgccgtcgcctggcacg
gccaacacgacggtcgccggcgtcgtcatcgcagctggcgccagcgccgagcgctatgat
ttcggcgcgaccggcgaagggctcagcggctacgtctacgtcgaccgcaacggtaacggc
acgcgcgacgaaggtgaacccggcattcccggcgtcatgatcacgctttcgggcgaaacc
ggcggtaatcaggacgtgtgcacgatcgcgacctgcaccgcgaccaccgacgcgagcggc
aatttcatcttcatcaatgtgccgggctcctcggccgcgggctacacgctgaccgaacag
gctcagtcgaccgcgccgctatccaactttgccgacggcgtcgacgcgccgggtacggtc
gagggaagtccgcgcggcacggccggcaatgatgtgatcagcggcatcgtactcggcgcc
ggtgaactcggcatcaacaacgccttcggcgagcgtggttcgtcgctcgcgggcagtgtt
tatatcgacggcaacgacgacggcgtgcgtcagggcggcgagacggctcttcccggggtc
atggttacgctgtccgggtcgagcgcaagcggcgaagacatttgcgcgcttcgggcggca
ctcgatcccgcgcttggctgcatcacgacgacgggacctgatggcagctatcgtttcgac
gacctcccggccggcacctacacgctgaccgaagaccagccgagcgcctatgccgacgga
cgcgaagcggccggcaccccggcgggtaccatcgacaatggcagcttcggcggcaccccc
gcgacgaaccgcgtggcctcgatcgcgctcggaaatggtgtcgcgggcacgggctatgat
ttcggcgagcgcgcgatcaccatctcgggccgggtctatctcgatcccgagcgcgacggc
gcggacaatgaagagaccggcatcccgggcgtgacgatcacccttcgccagggcggaacc
gtcatcgccaccacgaccaccggtcccgatggcagctaccgtttcgagaacctgcccgcc
ggaagctacacggtcgaggagacccagcccgcaggctatggctcgtcgactccgaacagc
cagtcggtcaatgtgagtgccggtcagaatcagtcgatcgattttggagacaccaactcc
agtcttgccggttcggtcttcgtcgacagcaacgatgatggcgttcgtcagcccggcgag
cgcggcatcgaaggcgtcgccgtgcgtctcaccggtaccgacgaggcgggcgcggcggtc
gaccgcacgctcaccaccgatgcggacggcaactatcgcttcggcgatgtcctcgccggc
acctacactctggctgaaacccagccggtcggcttcggggacggacgcgagagcgtcggc
acgtcgggcggttcggtcgcgaacgacagcatctcagccatcgcactcgcagccggcatc
gatgccaccgattatgtgttcggcgaggtcgggcagggccagggcggcacggtctatgtc
gatgacaaccgcaacggcgtccaggatccgggcgagcctggcattccgggcgttatcgtc
gagttgcagcgtccggacggatcggtcgtccagacggttaccaccggtcccgacgggcgc
tatgacttcgccgacatcgaggcaggcgactatgtgatcgtcgagacccagccggcgggc
tacggcgatgctgcggaaaatcctgccaaccgcgtcccgctgacggtcggcgtcggaaac
cccgtaacgcctgtcaatttcggcgagcgggtcggctcgatcgccggcctcgtctacaac
gacagcaacggcaatggtcagcgcgacccgaacgagccgacgatccccggtgtcacgttg
accctcaacgggaccgacgcgcgcggcaatccggtgacccggacggcagtctccgggccg
gatggcggctatctattcactggtcttcccggcggcagctactcgatcgtcgagacacag
cccgacggctatggcgacggaattgacacgcccggcacctcgggcggctcggccgccggc
gatacgatctcggcgatcaatctcaccgcggcggatgaggccaccggctatctgttcggc
gaagagggcgagggcgcgcgggtcacgggccgcgtctggacggacgacgatcatgatcgc
tcgctcgataatggcgaggctgtccgggccggctgggtagtcgagctcctgctcggtgac
gcgctgattgcaaccaccaccaccgcggcggacggcagctatgccttcaacggcgtcgcg
ccgggcaccggctatgaaatccgcttccgcaatcccgaaagcaacgcgctctatggcagc
gcgcgccccaacgaaactggcgctccggttaccgagggcgtggtgtcggcgagcaacccc
gcgggtgcgcggaccgagggcggtacgctgacggggctgacgcttgctcccggcgccgac
gtcccgcagcagtcactgccgctcgatccgtcaggtgtggtctacgacgcggtccgccgc
acgccggtttccggcgcgacggtggcgctgagcgggccggccggtttcgatcctgccatt
cacctgcttggcggcgccggcaacgtcacccaggtcaccggcgacagcggtatgtatcag
tatctgctgctgcccggcgcgcctgcgggcgtctataccctcgcagtgacgccgcccaat
ggcagctacaatccgatccagccgtcgagcatcattccgccctgcgcggggccgctcaat
gtcggcggcactccggatccgctgctcgtgtctatctataatggcgcgccgccctccggc
gccgtcaagacctgcacgaccggaggcgagagtaccgcctatttcctgagcttcacgctc
acccccggcgtgtccgccgatgtcgtcaacaaccatattccgatcgacccgatcctcgaa
ggcgcgatcgaagtcacgaaacggacgccgatgaccaatgtcagccgcggtggcctcgtt
ccctatgtcgtcactgcccgcaacacgctggccggcgcgatcaacgggatcacgatcacc
gatcgggtgcccgccggtttccgctatcgcaccggcagcgcaacgatcaacgggacggcg
gtcgagccgcagcaaagcggccgcctgctcagctggcccaaccagagcttcgcggccggc
gaagagaaggcggtccagctgattctcgtggtcggtgccggcgtcggcgagggcgagcat
gtcaacgaggcctatgcggtgaacgcgctcgtcggtgcggtcgtgtcgaacgtcgccgac
gcaaccgtgcggatcatccccgatcccgacttcgattgttccgatgtgatcggcaaggtc
ttcgacgatcgcaacatgaacggcgtgcaggacgagggcgagcccggcctccccggcgtc
cgcctggcctccgcgcgcggcctgctcatcaccaccgacgccgagggccgctatcatgtg
acctgtccgatgatcccgaacgaggagcgcgggtccaatttcatcctgaaggtcgacgtg
cggacgctgccgaccggtttccggatgatctcggtcaatcccgacacggtgcgcctcacc
cgcggccgcatggcgacgctgaacttcggtgctgcggtgggccgggtcgtgcggctcgac
gtcaacggcgatgccttcgagggcgacgccatcgccccggccttcaatgcccgtatcgac
ggcctgctcgaggttatcgccatgagcccctcggttctgcgcatcgcttatgtggcgcgc
ggagaagatgagcggatcatccggcgcaggctggcctccctgcgggacgtcatcgcagcg
aagtggaagcaggtcgacggacgatatcgactgatcatcgaggaggagaccgcggttccg
gccgccgcgcgtcagggagacgccaaatga
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