Sphingopyxis fribergensis: SKP52_00815
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Entry
SKP52_00815 CDS
T03542
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SKP52_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_00815
Enzymes [BR:
sphk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SKP52_00815
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SKP52_00815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJA07105
UniProt:
A0A0A7PAU2
LinkDB
All DBs
Position
complement(194999..197518)
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AA seq
839 aa
AA seq
DB search
MARGSITKSSPAEERLAKYRAKRDFARTAEPSGATEPTNGNGFVVQKHAASRLHYDFRLE
LDGTLVSWAVTRGPSSNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWE
SIPGKDPSQTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVQDAFVGGSDD
LVGTHLTSVDTGRTMEEIAAGKAVSKRKADSNAPAAASSAPTASRARRGRPKAAGILPAF
QPVQLAALVDHVPPGDRWLHELKYDGYRTLIAVGGGEGRAYTRSGLDWSDRFAGLIAEAL
KLNVSSALIDGEAVVILPDGRTSFQALQAALKSNPDTIDYFAFDLLELDGEDLTRLPLIE
RKEKLAALIGDAKGRIRYSDHIIGNGEKLLASFCGAGLEGVISKRVDARYSGSRAGTWLK
TKCIRRQEFVIVGWTPSDKQRGFRSLLLGVNENGKLRYAGKAGTGFTADEIERLMEIMAP
LERKAPTVDAPRAAVRGAHWIEPKLVAEIAYIEFTDEGVLRHPSYLGLREDKKPEAVVIE
AETPVAVATAPARSSVKISNRERVIFPEGKLTKGQLADYYEVVAPIMLPWAGSRPISLVR
CPQGRSKKCFFQKHDAGSFGDDVKQVGIREKDGHDEPYLFVDTPAGLLTCVQMGTIEFHG
WGARIEDVEKADRLVFDLDPDEGLEFKDVVSAAFHVQDVLAQMGLTTFPMVTGGKGVHVI
APLTPSAEWPVVKDFAHRFALALAQAEPERFTAALAKAKRTGRIFIDYLRNQRGATAVLP
YSARTREHAPIAVPLTWEELRDLDKPSHWHVGDGAEMVKRAASKNLAHWGRADQILPDL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcacgaggctcgataacgaaaagcagtccggcagaggagcgtctcgccaaatatcgc
gccaagcgcgattttgcgcgcaccgccgagccgtcgggcgcgaccgagcccacgaatggt
aacgggttcgtcgtccagaagcacgccgcctcccgcctgcattatgattttcgcctcgaa
ctcgacggcacgctggtgagctgggcggtcacgcgcggaccgagcagcaatccggacgac
aagcgtctcgcggtccgcaccgaggatcatccgctcgactacgcccgcttcgaaggcacg
atccccaagggcgaatatggcggcggcaccgtgatgctgtgggacaatggcacctgggaa
tcgattccgggcaaggaccccagccagacgctgcccgaaggccatcttcacttcattctt
cacggccggcgtatgcagggcgaatggatcctttttcgcctgaagccgcggggcaaggag
aaaggtgaaaactggatcctgcgcaaggtccaggacgcgttcgtcgggggctcagatgat
cttgtcggcacccatctcaccagcgtcgataccggacgcacgatggaggagattgccgcg
ggcaaggcggtgtccaagcgcaaagcagactctaacgcgcccgccgccgcgagttctgcg
ccgaccgcgtcccgagcgaggcgaggtcgcccgaaagcagcgggcatcttgccagcgttt
cagcctgtgcagcttgccgcgctcgtcgatcacgtgccgccgggtgatcgctggctgcac
gaacttaaatatgacggatatcgcacattgatcgctgtcggcggcggcgagggacgcgcc
tatacgcgctcgggcctcgactggtccgaccggttcgccggactgatcgccgaggcgttg
aagctgaatgtcagcagcgcgctgatcgacggcgaggccgtcgtcatccttcccgatggc
cgcaccagcttccaggccttgcaggcagcgctcaagagcaatcccgataccatcgattat
ttcgcgttcgacctgctcgagctcgacggcgaagatttgacgcgactcccgttgatcgag
cggaaggagaaattggctgcgcttatcggcgacgccaagggacgtatccgctactccgat
catatcatcggcaacggcgagaagcttcttgccagcttctgcggcgcgggtctcgaaggg
gtgatctcgaagcgtgttgatgcacgatacagcggctcgcgtgcggggacctggcttaag
acgaagtgcatccgccgtcaggagttcgtcatcgtcggctggacgccgtcggacaagcag
cgcgggttccgctcgctgctgctgggcgtgaacgaaaacggcaagctgcgctacgcgggc
aaggctggcacaggattcaccgccgacgagatcgagcggctgatggagatcatggcgccg
ctcgaacgcaaggccccgactgtcgacgcgccgcgtgccgccgttcgcggcgcccactgg
atcgagccgaagctcgtcgccgagatcgcctatatcgagttcaccgacgagggcgtcctg
cgccatccgagctatcttggcctgcgcgaggacaagaagcccgaagccgtcgtgatcgag
gccgagacaccggtggcggtcgcgaccgcccccgcgcgcagcagcgtcaagatcagcaat
cgcgagcgcgtgatcttccctgaaggcaagctcaccaagggacagctcgccgactattat
gaggtcgtcgcgcccatcatgctgccttgggcgggcagccggccgatcagcctcgtgcgc
tgtccgcaaggccgatcgaagaaatgcttcttccagaagcacgatgccggcagtttcggc
gacgacgtgaagcaggtcggcatccgcgagaaggacggccatgacgaaccctatctgttc
gtcgatacacccgcggggctgctcacctgcgtgcagatggggacgatcgagttccatggc
tggggggcgcggatcgaggatgtcgaaaaagccgatcggctcgtcttcgatctcgatccc
gacgaggggctggagttcaaggacgtcgtctcggcggccttccatgtgcaggatgtgctg
gcgcagatggggctcaccaccttcccgatggtcaccggcggtaagggcgtccatgtcatc
gcgccgctcaccccctcggccgaatggccggtggtgaaggacttcgcccatcgcttcgcc
ctggcgctcgcgcaggccgagccggaacgcttcactgcggccctggccaaagcgaaacgg
acgggccggatcttcatcgattatctgcgcaaccagcgcggcgcgacggcggtgctgccg
tacagcgcgcgaacccgcgaacatgcgccgatcgcggtgccgctgacttgggaggaactg
cgcgacctcgacaaaccctcgcactggcatgtcggtgacggggcggagatggtgaagcgt
gcggcgtcgaagaatctggcgcattgggggcgcgccgatcagatcctccccgacctgtga
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