Sphingopyxis fribergensis: SKP52_18625
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Entry
SKP52_18625 CDS
T03542
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SKP52_18625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_18625
Enzymes [BR:
sphk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SKP52_18625
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SKP52_18625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJA10595
UniProt:
A0A0A7PKR9
LinkDB
All DBs
Position
3945576..3948083
Genome browser
AA seq
835 aa
AA seq
DB search
MPRAADPLAQYNAKRDFALTPEPAGKVEKGAGNRFIVQKHDATRLHYDLRLEVDGVLKSW
AVTKGPSPDPADKRLAVRTEDHPMSYADFEGGIPKGEYGGGTVMLWDRGTWAPIAGKSAK
DIDQGHLHFTLDGTRMKGEWLLVRMKPRPGEKRENWLLRKVDDAFAGGTDDLVGRELTSI
LTGRTMAEIAGDEGGEQSLKGAKGATFAKKMADAAAHNKKIAKPAAKGKLPKFRPLQLAT
LVDAVPGGNGWFHEIKYDGYRAEIAAAGSDVRIYTRNGLDWTDKFAPLVRHIAALDLPPC
LIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEGTALHLFAFDLLELGGKSLANLGNLER
KERLEALLRDAKAPIAVADHVIGAGEKLYEAMCRAGQEGIISKRADAGYSGRRSKNWLKV
KCTRRQEFILVGWNPSSAKARPFASLLLAQREGDTLIYKGNVGTGFDSDTMADLAKKFAR
LERKTAPLDVDAAAARKVHWLRPELVAEIAFAEFTASGSVRHASFLGLRSDKEAKDVTPE
KKQPTPTPESDVTISSRDRVIFPEAKATKGDLADYYGAIAPVMLPHAARRPISLVRCPQG
RGKKCFFQKHDSGSFGDHVLHVPIKEKDGGHEDYLYVEDADGLLACVQMGTIEFHGWGSH
VDSLEKPDRMVFDLDPDEGLDFADVKKAALDIRRQLADIGLVSFAMLSGGKGVHVVVPLD
PGHSWDKHKDFSKRFAEALSMAEPDRFIATMSKAKRKGKIFIDYLRNQRGSTAVMPYSAR
AREQAPVAVPIGWDALADVEKAGQWTIKDSDELLARAVGPELKGWGFANQTLPDF
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgccgccgacccgctcgcgcaatataacgccaagcgcgatttcgcgctgacc
cccgaacccgccggcaaggttgagaaaggcgccggcaaccgcttcatcgtccagaagcat
gacgcgacgcggctccactacgacttgcgcctcgaagtcgatggcgtgctcaaaagctgg
gcggtgaccaaggggccgagccccgaccccgccgacaagcgcctcgcggtgcgcactgaa
gaccatccgatgagctacgccgatttcgagggcggcatccccaagggcgaatatggcggc
ggcaccgtgatgctatgggatcgcggcacctgggcgccgattgcaggcaagagcgccaag
gatatcgaccaaggccatctccatttcaccctcgacgggacacgcatgaagggcgaatgg
ctgctcgtccgcatgaaaccgcgccccggcgagaagcgcgagaactggctgctgcgcaaa
gtcgacgatgctttcgccggcggcaccgacgatcttgtcggccgcgagctgacgagcata
cttaccggccgcacgatggccgaaatcgcgggcgacgaaggcggcgagcaatcgttgaag
ggcgccaagggcgcgaccttcgcaaagaagatggccgacgccgccgcgcacaacaagaaa
atcgccaagcctgccgccaagggcaagctccccaaattccgtccgctccaactcgcgacg
ctcgtcgacgccgtgcccggcggcaacggctggttccacgagatcaagtacgacggatac
cgcgccgaaatcgccgccgcgggatcggacgtccgcatctatacccgcaacggtctcgac
tggaccgacaagtttgcgcccctcgtccgccacatcgccgcgctcgacctgccgccctgc
ctgatcgacggcgaaatcgtcgcctatggcaaggacggcaatcccgacttctcctcgctg
caagccgtcctcaagcgcggccatggcgcgcaggacgagggcaccgcgctccatctcttc
gccttcgatctcctcgaactgggcggcaaatcgctcgccaatctcggaaatctcgaacgt
aaggaacgcctcgaagccctgctccgcgatgccaaggcgccgatcgcggtcgccgatcat
gtcatcggcgcgggcgaaaaactctacgaagcgatgtgccgcgcggggcaggaaggcatc
atctcgaaacgcgccgacgccggctattcgggccgccgctcgaaaaattggttgaaggtc
aaatgcacgcggcggcaggagttcattctcgtcggctggaacccgtcgtcggccaaggcg
cgccccttcgcctccttgctcctcgcgcagcgcgagggcgatacgcttatctacaagggc
aatgtcggcaccggcttcgacagcgacaccatggccgacctcgcgaagaaattcgcaagg
ctcgaacgcaagaccgcgccgcttgacgtcgacgccgctgccgcgcgcaaggtccattgg
ctgaggcccgaactcgtcgccgagatcgccttcgccgaattcaccgcgagcgggtcggtg
cgccacgcgagctttcttggcctgcgcagcgacaaggaggcaaaagacgtgacccccgaa
aagaaacagcccacccctacgcctgaaagcgacgtgacgatcagcagccgcgaccgcgtg
atctttcccgaggcaaaggcgaccaaaggcgacctcgcggattactacggcgcgatcgcg
ccggtcatgctcccgcacgccgcgcgccgcccgatcagcctcgtccgctgcccgcagggg
cgcggcaagaaatgctttttccagaagcatgactcgggcagcttcggcgaccatgtgctc
cacgtgcccatcaaggaaaaggacggcgggcatgaggattatctctatgtcgaggatgcc
gacggcctgctcgcctgcgtccagatggggacgatcgagttccacggctggggcagccat
gtggatagcctcgaaaagcccgaccgcatggtgttcgacctcgaccccgacgaagggctt
gatttcgccgacgtcaaaaaagccgcgctcgatatccgccgccagctcgccgacatcggg
ctcgtcagcttcgcgatgctctcgggcggcaagggcgtgcatgtcgtcgtcccgctcgat
ccggggcacagctgggacaagcacaaggatttttcgaaacgctttgccgaggcgctgagc
atggccgaacccgaccgctttatcgcgacgatgagcaaggcaaagcgcaagggaaagatc
ttcatcgattacctccgcaaccagcgcggcagcactgcggtcatgccctattcggcgcgc
gcacgcgaacaggcgccggtcgccgtcccgatcggctgggacgcgctcgccgatgtcgaa
aaggccggccagtggacgattaaggatagcgacgagctgctcgcccgcgccgtcggcccc
gaactcaagggctggggatttgcgaaccagacgcttcccgatttctag
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