Sphingobium sp. RAC03: BSY17_3129
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Entry
BSY17_3129 CDS
T04461
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSY17_3129 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphr03400
]
BSY17_3129 (ligD)
Enzymes [BR:
sphr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSY17_3129 (ligD)
DNA repair and recombination proteins [BR:
sphr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSY17_3129 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
CATASP
Motif
Other DBs
NCBI-ProteinID:
AOF95058
UniProt:
A0A1B3MPN1
LinkDB
All DBs
Position
pBSY17_1:15826..18303
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AA seq
825 aa
AA seq
DB search
MAKAQDKSPKDSLALYRAKRDFARTAEPAGAAFPTTGNGFVVQKHAASRLHYDFRLELDG
VLVSWAVTRGPSANPDDKRLAVRTEDHPLDYARFEGLIPKGEYGGGTVMLWDNGTWEAVA
GKDPRKTLPEGHLHFVLHGRRMQGEWILFRLKPRGKERGENWILRKVNDGFAGGSDDLVS
HHLTSIDSGRTMEEIAAGKTVPKRKAAKAKAAVRGKAKGDAPPPFQPVQLATLVDHVPAG
NHWLHELKYDGYRTLLAIGGDNGRAYTRSGLDWSDRFAGLIADATKLDASSALLDGEAVV
ILPDGRTSFQGLQAALKDDPGQIDYMAFDLLALNGEDLTGRPLLERKAMLATLIGDGVGH
IRYSDHIVGRGEQLFERFCGAGLEGVISKRVGARYSGARSGNWVKTKCIRRQEFVIVGWL
PSDKQRGFRSLLLGVHENGALRFAGKVGTGFSADEMERLLALMAPLARKTSTVEAPRAAV
REARWITPKLVAEVAFAEFTDEGVLRHSSYLGLREDKKPEAVVLEVEAPVGQATQPAATS
GVKISNRDRVIFPEGKLTKGELADYYEAVADIMLPWAGSRPISLVRCPQGRDKKCFFQKH
DAGSFGDDVKQVGILEKDGDEEPYLFVDAPAGLLTCVQMGTIEFHGWGARIEDVEKPDRL
VFDLDPDEGLAFKDVVSAAFHLQDMLAQMGLVTFPMVTGGKGVHVIAPLTPSAEWPQVKD
FAHRFATALSQADPDRFTAALAKAKRTGKIFIDYLRNQRGATAVMPYSARSRPFAPIAVP
ISWEELRTLDGPDHWHIGDASEMVKRAASKDLAHWGRADQILPDL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggcgcaggataaatctccgaaggacagcctggccctttatcgggcgaagcgc
gattttgcgcgcacggccgagcctgcgggcgcggcgtttccgacgaccggcaacggcttt
gtcgtccagaaacatgcagcgtcgcggctgcattatgatttccgactggaactggatggc
gtgctggtcagctgggccgtcacccgtgggccgagcgccaatcccgacgacaagcgtctg
gccgtgcggaccgaagatcacccgctcgattatgcgcggttcgaaggcctgatccccaaa
ggcgaatatggcggcggcaccgtcatgctgtgggacaatggcacatgggaagctgtggcg
ggtaaagacccccgcaagacgctgcccgaagggcatctccatttcgtcctccacggccgc
cggatgcagggcgaatggatcttgttccggcttaagccacgggggaaggagcgcggcgaa
aactggatattgcgcaaggtcaatgacggcttcgccggtgggtcggacgatctggtcagt
caccatctcaccagtatcgacagcggccgcacgatggaggaaatcgccgccggaaaaacc
gttcccaagcgcaaagccgcaaaggcgaaagcggctgtacgcggaaaagcgaagggcgat
gctccgccgccgtttcagccggtacagttggcgacgctggtcgatcatgtgccagcgggc
aatcattggctccatgagctgaaatatgatggctatcgcacgctgttggccatcggcggc
gacaatggccgcgcctacacccgatcaggcctcgactggtccgatcgctttgccgggtta
atcgccgacgcgacaaaattggacgcatccagcgctttgctcgacggcgaggccgttgtg
atcctgcccgatggccgcaccagctttcagggtttgcaggccgcgctaaaagacgatccg
ggccagatcgactatatggcgttcgacctgctggcattgaatggcgaggatctgaccggg
cggcccttgcttgaacgcaaggcgatgctcgccacgctgatcggcgacggggtggggcat
attcgttattccgaccacattgtcgggcgcggtgagcaactgttcgagcgtttttgcggc
gcggggcttgaaggcgtcatctccaagcgggtgggtgcgcgctattccggtgcgcgatcg
ggcaattgggtcaagaccaagtgcatccggcgtcaggaattcgtgattgtgggctggtta
ccctcggacaagcagcgcgggttccgctcgctgcttctcggcgtccatgaaaatggcgcg
ctgcggttcgccgggaaagtcggcacgggcttttcggcggacgagatggagcggctgctg
gccttgatggcaccgctggcccggaagacgtcgacggttgaggctccgcgcgcggcggtg
cgcgaggcgcgctggatcacaccgaaactggtcgccgaggtcgcctttgccgagtttacc
gacgaaggcgtgctgcgccattcaagctatctgggtctacgtgaggacaagaagccggaa
gccgtcgtgctggaggtcgaagcaccggtcggacaggcgacgcagcccgccgcgaccagc
ggggtcaagatcagcaatcgcgatcgggtgatcttcccggaaggcaagctcaccaagggc
gaactggccgactattatgaagcggtggcggatatcatgcttccctgggcaggtagtcgg
ccgatcagcctcgtgcgctgtccgcagggccgcgacaagaaatgctttttccagaaacat
gatgctggcagcttcggcgacgacgtcaagcaagtcggcatcttggaaaaggacggcgat
gaggaaccctatctcttcgtcgatgcgcccgcggggctgctgacctgcgttcaaatgggg
acgatcgaatttcacggctggggcgccaggatcgaggatgtcgagaagcccgaccggctt
gtgttcgatcttgatcccgacgagggattggcgttcaaggatgtggtgtcagccgccttc
caccttcaggatatgctggcgcagatgggactcgtgacctttccgatggtgacgggcggc
aagggggtgcatgtgatcgcgccgctgacccccagcgcggaatggccgcaggtcaaggat
ttcgcgcatcggttcgctaccgctttgtcgcaagccgatcccgaccggttcaccgccgcg
ctcgccaaggcgaagcggacgggcaagatcttcatcgactatctgcgcaaccaacgcggc
gcgacggcggtgatgccttatagcgcgcggtcgcggccgttcgcaccgatcgccgtgccg
atcagctgggaggaactgcgcacgctcgatggcccagatcattggcatatcggggatgca
agcgagatggtgaaacgcgcggcttcgaaggatctggcccattggggcagagctgatcag
attctgcccgacctatag
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