KEGG   Sphingobium sp. RAC03: BSY17_3129
Entry
BSY17_3129        CDS       T04461                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphr  Sphingobium sp. RAC03
Pathway
sphr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSY17_3129 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphr03400]
    BSY17_3129 (ligD)
Enzymes [BR:sphr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY17_3129 (ligD)
DNA repair and recombination proteins [BR:sphr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSY17_3129 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S CATASP
Other DBs
NCBI-ProteinID: AOF95058
UniProt: A0A1B3MPN1
LinkDB
Position
pBSY17_1:15826..18303
AA seq 825 aa
MAKAQDKSPKDSLALYRAKRDFARTAEPAGAAFPTTGNGFVVQKHAASRLHYDFRLELDG
VLVSWAVTRGPSANPDDKRLAVRTEDHPLDYARFEGLIPKGEYGGGTVMLWDNGTWEAVA
GKDPRKTLPEGHLHFVLHGRRMQGEWILFRLKPRGKERGENWILRKVNDGFAGGSDDLVS
HHLTSIDSGRTMEEIAAGKTVPKRKAAKAKAAVRGKAKGDAPPPFQPVQLATLVDHVPAG
NHWLHELKYDGYRTLLAIGGDNGRAYTRSGLDWSDRFAGLIADATKLDASSALLDGEAVV
ILPDGRTSFQGLQAALKDDPGQIDYMAFDLLALNGEDLTGRPLLERKAMLATLIGDGVGH
IRYSDHIVGRGEQLFERFCGAGLEGVISKRVGARYSGARSGNWVKTKCIRRQEFVIVGWL
PSDKQRGFRSLLLGVHENGALRFAGKVGTGFSADEMERLLALMAPLARKTSTVEAPRAAV
REARWITPKLVAEVAFAEFTDEGVLRHSSYLGLREDKKPEAVVLEVEAPVGQATQPAATS
GVKISNRDRVIFPEGKLTKGELADYYEAVADIMLPWAGSRPISLVRCPQGRDKKCFFQKH
DAGSFGDDVKQVGILEKDGDEEPYLFVDAPAGLLTCVQMGTIEFHGWGARIEDVEKPDRL
VFDLDPDEGLAFKDVVSAAFHLQDMLAQMGLVTFPMVTGGKGVHVIAPLTPSAEWPQVKD
FAHRFATALSQADPDRFTAALAKAKRTGKIFIDYLRNQRGATAVMPYSARSRPFAPIAVP
ISWEELRTLDGPDHWHIGDASEMVKRAASKDLAHWGRADQILPDL
NT seq 2478 nt   +upstreamnt  +downstreamnt
atggccaaggcgcaggataaatctccgaaggacagcctggccctttatcgggcgaagcgc
gattttgcgcgcacggccgagcctgcgggcgcggcgtttccgacgaccggcaacggcttt
gtcgtccagaaacatgcagcgtcgcggctgcattatgatttccgactggaactggatggc
gtgctggtcagctgggccgtcacccgtgggccgagcgccaatcccgacgacaagcgtctg
gccgtgcggaccgaagatcacccgctcgattatgcgcggttcgaaggcctgatccccaaa
ggcgaatatggcggcggcaccgtcatgctgtgggacaatggcacatgggaagctgtggcg
ggtaaagacccccgcaagacgctgcccgaagggcatctccatttcgtcctccacggccgc
cggatgcagggcgaatggatcttgttccggcttaagccacgggggaaggagcgcggcgaa
aactggatattgcgcaaggtcaatgacggcttcgccggtgggtcggacgatctggtcagt
caccatctcaccagtatcgacagcggccgcacgatggaggaaatcgccgccggaaaaacc
gttcccaagcgcaaagccgcaaaggcgaaagcggctgtacgcggaaaagcgaagggcgat
gctccgccgccgtttcagccggtacagttggcgacgctggtcgatcatgtgccagcgggc
aatcattggctccatgagctgaaatatgatggctatcgcacgctgttggccatcggcggc
gacaatggccgcgcctacacccgatcaggcctcgactggtccgatcgctttgccgggtta
atcgccgacgcgacaaaattggacgcatccagcgctttgctcgacggcgaggccgttgtg
atcctgcccgatggccgcaccagctttcagggtttgcaggccgcgctaaaagacgatccg
ggccagatcgactatatggcgttcgacctgctggcattgaatggcgaggatctgaccggg
cggcccttgcttgaacgcaaggcgatgctcgccacgctgatcggcgacggggtggggcat
attcgttattccgaccacattgtcgggcgcggtgagcaactgttcgagcgtttttgcggc
gcggggcttgaaggcgtcatctccaagcgggtgggtgcgcgctattccggtgcgcgatcg
ggcaattgggtcaagaccaagtgcatccggcgtcaggaattcgtgattgtgggctggtta
ccctcggacaagcagcgcgggttccgctcgctgcttctcggcgtccatgaaaatggcgcg
ctgcggttcgccgggaaagtcggcacgggcttttcggcggacgagatggagcggctgctg
gccttgatggcaccgctggcccggaagacgtcgacggttgaggctccgcgcgcggcggtg
cgcgaggcgcgctggatcacaccgaaactggtcgccgaggtcgcctttgccgagtttacc
gacgaaggcgtgctgcgccattcaagctatctgggtctacgtgaggacaagaagccggaa
gccgtcgtgctggaggtcgaagcaccggtcggacaggcgacgcagcccgccgcgaccagc
ggggtcaagatcagcaatcgcgatcgggtgatcttcccggaaggcaagctcaccaagggc
gaactggccgactattatgaagcggtggcggatatcatgcttccctgggcaggtagtcgg
ccgatcagcctcgtgcgctgtccgcagggccgcgacaagaaatgctttttccagaaacat
gatgctggcagcttcggcgacgacgtcaagcaagtcggcatcttggaaaaggacggcgat
gaggaaccctatctcttcgtcgatgcgcccgcggggctgctgacctgcgttcaaatgggg
acgatcgaatttcacggctggggcgccaggatcgaggatgtcgagaagcccgaccggctt
gtgttcgatcttgatcccgacgagggattggcgttcaaggatgtggtgtcagccgccttc
caccttcaggatatgctggcgcagatgggactcgtgacctttccgatggtgacgggcggc
aagggggtgcatgtgatcgcgccgctgacccccagcgcggaatggccgcaggtcaaggat
ttcgcgcatcggttcgctaccgctttgtcgcaagccgatcccgaccggttcaccgccgcg
ctcgccaaggcgaagcggacgggcaagatcttcatcgactatctgcgcaaccaacgcggc
gcgacggcggtgatgccttatagcgcgcggtcgcggccgttcgcaccgatcgccgtgccg
atcagctgggaggaactgcgcacgctcgatggcccagatcattggcatatcggggatgca
agcgagatggtgaaacgcgcggcttcgaaggatctggcccattggggcagagctgatcag
attctgcccgacctatag

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